YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHD_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	32	0.96
Non-Cytoplasmic	33	43	0.91
Transmembrane Helix	44	65	0.89
Cytoplasmic	66	75	0.71
Transmembrane Helix	76	97	0.89
Non-Cytoplasmic	98	113	0.89
Transmembrane Helix	114	134	0.73
Cytoplasmic	135	138	0.59
Transmembrane Helix	139	159	0.81
Non-Cytoplasmic	160	169	0.73
Transmembrane Helix	170	191	0.91
Cytoplasmic	192	208	0.75
Transmembrane Helix	209	229	0.90
Non-Cytoplasmic	230	245	0.72
Transmembrane Helix	246	266	0.84
Cytoplasmic	267	274	0.64
Transmembrane Helix	275	295	0.75
Non-Cytoplasmic	296	298	0.48
Transmembrane Helix	299	318	0.77
Cytoplasmic	319	332	0.67
Transmembrane Helix	333	355	0.89
Non-Cytoplasmic	356	371	0.78
Transmembrane Helix	372	395	0.87
Cytoplasmic	396	422	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKYPRSLR CCLPLWAFGL QVTFILLFYF LIGQDPIQAD HKFMAIYQVI QDLTLVAALG  60
   61 FGFLSSSFRR HGWSSVAFSF FMLALGVQGT ILLDYFLNWV LDWNMIKNPF SPFLSIQRAT 120
  121 ISTLPLLISA GAVLGKVNLV QLAVMVLVEA MTFGAIRVAD KKVFRIEDHI IMMYGHVFGA 180
  181 YFGLTVAWWL SKSLPRRRHE NAQTEKVQMT TSSSLFAMLG TLFLWIFWPS INSALLEGTK 240
  241 KKNAVFNTYY ALAVSTVTAT SMSALSHPKG KINMVHIHNA VLAGGVAVGA PSCLISSPWI 300
  301 AMVLGLTAGL ISIWGAKCPQ VCLSDLLLNP SGIHYTFGLP GLLGALTYYC LHIIAESRPS 360
  361 NLWIVTQTIT DVGALSFAMA MGMVTGLLTG CLLSVKVWRA PHAVKYFDDQ AFWEFPHLAV 420
  421 EF