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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCNL1_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGPHPTST AAAASASSAA PSAGGSSSGT TTTTTTTTGG ILIGDRLYSE VSLTIDHSVI  60
   61 PEERLSPTPS MQDGLDLPSE TDLRILGCEL IQAAGILLRL PQVAMATGQV LFHRFFYSKS 120
  121 FVKHSFEIVA MACINLASKI EEAPRRIRDV INVFHHLRQL RGKRTPSPLI LDQNYINTKN 180
  181 QVIKAERRVL KELGFCVHVK HPHKIIVMYL QVLECERNQT LVQTAWNYMN DSLRTNVFVR 240
  241 FQPETIACAC IYLAARALQI PLPTRPHWFL LFGTTEEEIQ EICIETLRLY TRKKPNYELL 300
  301 EKEVEKRKVA LQEAKLKAKG LNLDGTPALS TLGGFSPASK PSSPREVKAE EKSPVSINVK 360
  361 TVKKEPEDRQ QASKSPYNGV RKDSKRSRNS RSASRSRSRT RSRSRSHTPR RHYNNRRSRS 420
  421 GTYSSRSRSR SRSHSESPRR HHNHGSPHLK AKHTREDLKS SNRHGHKRKK SRSRSQSKTR 480
  481 DHSDVTKKHR HERGHHRDRR ERSRSFERSH KGKHHGGSRS GHGRHRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle