YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126631996, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALRSRVVT ECLTTCMFRQ TNTSSIFTLP IVMTRNKWFV PRSHLHTGRG SRDPVRALLG  60
   61 CQNHGRFLLV SSVGIRHNSS QTVETTIQSV STPSEPPDAA ISAPASIPTP AVDPTPSVTP 120
  121 PITEQVAEAP LTALDVLQGV GAEASLSELG LCNSTPVGLI QNLLEFMHVS IGLPWWGAIV 180
  181 AGTIVARCAV FPVIVKGQRE AAKLNNVMPE MTKLTNRMNE AKQSGNKFEF SKAYTDLMMF 240
  241 QKKKDVNPFR GFLVPLVQAP IFLSFFIALR KMSELPVPSL QTGGLWWFTD LTAADPFYIL 300
  301 PIAVTGTMVA ILELGAESGV DNPNLRAMKT VFRIMPFVIL PLTINFPTAV FTYWMTSNLF 360
  361 SLAQVAVLRH PAVRQKLRIP ERIVHPQSAL PENEGFFATV KKGWKNAQLA QQLEERERRI 420
  421 KGHLDIAAKG PLRQTFTHNP LQQSAAPMST GKPSNPNQGK KRPWEDTIG

Type	Start	End	Confidence
Non-Cytoplasmic	1	171	0.80
Transmembrane Helix	172	191	0.87
Cytoplasmic	192	247	0.95
Transmembrane Helix	248	269	0.92
Non-Cytoplasmic	270	293	0.91
Transmembrane Helix	294	316	0.87
Cytoplasmic	317	331	0.89
Transmembrane Helix	332	355	0.87
Non-Cytoplasmic	356	469	0.77