YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PO121_RAT
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAAAAADG GERRRPPLGV REGRGRTRGC GGPAGAAALG LALLGLALYL VPAAAALAWL  60
   61 AVGASAAWWG LSREPRGPRG LSSFVRESRR HPRPALTASP LPAKSPVNGS LCEPRSPLGG 120
  121 PDPAELLLMG SYLGKPGPPE PALPQDPRDR PGRRPPSRSP PSSSTAQRVH HVYPALPTPL 180
  181 LRPSRRPPHR DCGPLSSRFV ITPRRRYPIQ QAQYSLLGAL PTVCWNGGHK KAVLSARNSR 240
  241 MVCSPVTVRI APPDSKLFRS PMPEQILSTT LSSPSSNAPD PCAKETVLNA LKEKKKRTVA 300
  301 EEDQLHLDGQ ENKRRRHDSS GSGHSAFEPL VANGVPAAFV PKPGSLKRSL ASQSSDDHLN 360
  361 KRSRTSSVSS LTSTCTGGIP SSSRNAITSS YSSTRGVSQL WKRSGPTSSP FSSPASSRSQ 420
  421 TPERPAKKTR EEEPCHQSSS SAPLVTDKES PGEKVTDPAT GKQQSLWTSP PTPGSSGQRK 480
  481 RKIQLLPSRR GDQLTLPPPP ELGYSITAED LDMERRASLQ WFNKVLEDKT DDASTPATDT 540
  541 SPATSPPFTL TLPTVGPAAS PASLPAPSSN PLLESLKKMQ ESPAPSSSEP PEAATVAAPS 600
  601 PPKTPSLLAP LVSPLTGPLA STSSDSKPTT TFLGLASASS ATPLTDTKAP GVSQAQLCVS 660
  661 TPAATAPSPT PASTLFGMLS PPASSSSLAT PGPACASPMF KPIFPATPKS ESDNPLPTSS 720
  721 SAATTTPAST ALPTTATATA HTFKPIFESV EPFAAMPLSP PFSLKQTTAP ATTAATSAPL 780
  781 LTGLGTATST VATGTTASAS KPVFGFGVTT AASTASTIAS TSQSILFGGA PPVTASSSAP 840
  841 ALASIFQFGK PLAPAASVAG TSFSQSLASS AQTAASNSSG GFSGFGGTLT TSTSAPATTS 900
  901 QPTLTFSNTV TPTFNIPFSA SAKPALPTYP GANSQPTFGA TDGATKPALA PSFGSSFTFG 960
  961 NSVASAPSAA PAPAAFGGAA QPAFGGLKAS ASTFGTPAST QPAFGSTTSV FSFGSATTSG1020
 1021 FGAAAATTQT THSGSSSSLF GSSTPSPFTF GGSAAPAGGG GFGLSATPGT GSTSGTFSFG1080
 1081 SGQSGTTGTT TSFGGSLSQN TLGAPSQSSP FAFSVGSTPE SKPVFGGTST PTFGQSAPAP1140
 1141 GVGTTGSSLS FGAPSTPAQG FVGVGPFGSG APSFSIGAGS KTPGARQRLQ ARRQHTRKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle