YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWTGLYTLL SGVNRHSTAI GRVWLSVIFI FRIMVLVVAA ESVWGDEKSS FICNTLQPGC  60
   61 NSVCYDHFFP ISHVRLWSLQ LILVSTPALL VAMHVAHQQH IEKKMLRLEG HGDPLHLEEV 120
  121 KRHKVHISGT LWWTYVISVV FRLLFEAVFM YVFYLLYPGY AMVRLVKCEA FPCPNTVDCF 180
  181 VSRPTEKTVF TVFMLAASGI CIILNVAEVV YLIIRACARR AQRRSNPPSR KGSGFGHRLS 240
  241 PEYKQNEINK LLSEQDGSLK DILRRSPGTG AGLAEKSDRC SAC

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	75	0.94
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	130	0.97
Transmembrane Helix	131	153	0.94
Non-Cytoplasmic	154	191	0.95
Transmembrane Helix	192	214	0.94
Cytoplasmic	215	283	0.99