YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S26A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.98
Transmembrane Helix	83	105	0.84
Non-Cytoplasmic	106	110	0.59
Transmembrane Helix	111	131	0.79
Cytoplasmic	132	137	0.66
Transmembrane Helix	138	157	0.78
Non-Cytoplasmic	158	185	0.66
Transmembrane Helix	186	211	0.79
Cytoplasmic	212	213	0.50
Transmembrane Helix	214	234	0.72
Non-Cytoplasmic	235	268	0.69
Transmembrane Helix	269	285	0.91
Cytoplasmic	286	295	0.80
Transmembrane Helix	296	317	0.84
Non-Cytoplasmic	318	344	0.83
Transmembrane Helix	345	371	0.79
Cytoplasmic	372	384	0.83
Transmembrane Helix	385	407	0.91
Non-Cytoplasmic	408	419	0.75
Transmembrane Helix	420	442	0.88
Cytoplasmic	443	479	0.84
Transmembrane Helix	480	507	0.89
Non-Cytoplasmic	508	780	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARDRRSEP PQLAEYSCSY AVSRPVYSEL AFQQQRERRL PERRTLRDSL ARSCSCSRKR  60
   61 AFGALKALLP ILDWLPKYRV KEWLLSDIIS GVSTGLVGTL QGMAYALLAA VPVQYGLYSA 120
  121 FFPILTYFVF GTSRHISVGP FPVVSLMVGS VVLSMAPDDH FLVPSGNGST LNTTTLDTGT 180
  181 RDAARVLLAS TLTLLVGIIQ LVFGGLQIGF IVRYLADPLV GGFTTAAAFQ VLVSQLKIVL 240
  241 NVSTKNYNGV LSIIYTLIEI FQNIGDTNIA DFIAGLLTII VCMAVKELND RFKHKIPVPI 300
  301 PIEVIVTIIA TAISYGANLE ANYNAGIVKS IPSGFLPPVL PSVGLFSDML AASFSIAVVA 360
  361 YAIAVSVGKV YATKHDYIID GNQEFIAFGI SNVFSGFFSC FVATTALSRT AVQESTGGKT 420
  421 QVAGLISAVI VMVAIVALGK LLEPLQKSVL AAVVIANLKG MFMQVCDVPR LWKQNKTDAV 480
  481 IWVFTCIMSI ILGLDLGLLA GLLFGLLTVV LRVQFPSWNG LGSVPSTDIY KSITHYKNLE 540
  541 EPEGVKILRF SSPIFYGNVD GFKKCVKSTV GFDAIRVYNK RLKALRRIQK LIKKGQLRAT 600
  601 KNGIISDVGS SNNAFEPDED VEEPEELDIP TKEIEIQVDW NSELPVKVNV PKVPIHSLVL 660
  661 DCGAVSFLDV VGVRSLRMIV KEFQRIDVNV YFALLQDDVL EKMEQCGFFD DNIRKDRFFL 720
  721 TVHDAILYLQ NQAKSREGQD SLLETITLIQ DCKDPLELME AEINEEELDV QDEAMRRLAS 780
  781