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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DCC_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSLGCVWV PKLAFVLFGA SLLSAHLQVT GFQIKPFTSL HFVSEPSDAV TMRGGNVLLN  60
   61 CSAESDRGVP VIKWKKDGLI LALGMDDRKQ QLPNGSLLIQ NILHSRHHKP DEGLYQCEAS 120
  121 LGDSGSIISR TAKVMVAGPL RFLSQTESIT AFMGDTVLLK CEVIGDPMPT IHWQKNQQDL 180
  181 NPIPGDSRVV VLPSGALQIS RLQPGDSGVY RCSARNPAST RTGNEAEVRI LSDPGLHRQL 240
  241 YFLQRPSNVI AIEGKDAVLE CCVSGYPPPS FTWLRGEEVI QLRSKKYSLL GGSNLLISNV 300
  301 TDDDSGTYTC VVTYKNENIS ASAELTVLVP PWFLNHPSNL YAYESMDIEF ECAVSGKPVP 360
  361 TVNWMKNGDV VIPSDYFQIV GGSNLRILGV VKSDEGFYQC VAENEAGNAQ SSAQLIVPKP 420
  421 AIPSSSILPS APRDVVPVLV SSRFVRLSWR PPAEAKGNIQ TFTVFFSREG DNRERALNTT 480
  481 QPGSLQLTVG NLKPEAMYTF RVVAYNEWGP GESSQPIKVA TQPELQVPGP VENLHAVSAS 540
  541 PTSILITWEP PAYANGPVQG YRLFCTEVST GKEQNIEVDG LSYKLEGLKK FTEYTLRFLA 600
  601 YNRYGPGVST DDITVVTLSD VPSAPPQNVS LEVVNSRSIK VSWLPPPSGT QNGFITGYKI 660
  661 RHRKTTRRGE METLEPNNLW YLFTGLEKGS QYSFQVSAMT VNGTGPPSNW YTAETPENDL 720
  721 DESQVPDQPS SLHVRPQTNC IIMSWTPPLN PNIVVRGYII GYGVGSPYAE TVRVDSKQRY 780
  781 YSIERLESSS HYVISLKAFN NAGEGVPLYE SATTRSITDP TDPVDYYPLL DDFPTSGPDV 840
  841 STPMLPPVGV QAVALTHEAV RVSWADNSVP KNQKTSDVRL YTVRWRTSFS ASAKYKSEDT 900
  901 TSLSYTATGL KPNTMYEFSV MVTKNRRSST WSMTAHATTY EAAPTSAPKD LTVITREGKP 960
  961 RAVIVSWQPP LEANGKITAY ILFYTLDKNI PIDDWIMETI SGDRLTHQIM DLSLDTMYYF1020
 1021 RIQARNAKGV GPLSDPILFR TLKVEHPDKM ANDQGRHGDG GYWPVDTNLI DRSTLNEPPI1080
 1081 GQMHPPHGSV TPQKNSNLLV ITVVTVGVLT VLVVVIVAVI CTRRSSAQQR KKRATHSASK1140
 1141 RKGSQKDLRP PDLWIHHEEM EMKNIEKPAG TDPAGRGSPI QSCQDLTPVS HSQSESQMGS1200
 1201 KSASHSGQDT EEAGSSMSTL ERSLAARRAT RTKLMIPMEA QSNNPAVVSA IPVPTLESAQ1260
 1261 YPGILPSPTC GYPHPQFTLR PVPFPTLSVD RGFGAGRTVS EGPTAQQQPM LPPAQPEHPS1320
 1321 SEEAPSRTIP TACVRPTHPL RSFANPLLPP PMSAIEPKVP YTPLLSQPGP TLPKTHVKTA1380
 1381 SLGLAGKARS PLLPVSVPTA PEVSEESHKP TEDPASVYEQ DDLSEQMASL EGLMKQLNAI1440
 1441 TGSAF

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