YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K2C8_RAT
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRVTQKSY KMSTSGPRAF SSRSFTSGPG ARISSSSFSR VGSSSSSFRG SLGGFGGAGV  60
   61 GGITAVTVNQ SLLNPLKLEV DPNIQAVRTQ EKEQIKTLNN KFASFIDKVR FLEQQNKMLE 120
  121 TKWSLLQQQK TSRSNMDNMF ESYINNLRRQ LEALGQEKLK LEVELGNMQG LVEDFKNKYE 180
  181 DEINKRTEME NEFVLIKKDV DEAYMNKVEL ESRLEGLTDE INFLRQIHEE EIRELQSQIS 240
  241 DTSVVLSMDN SRSLDMDSII AEVRAQYEEI ANRSRAEAET MYQIKYEELQ TLAGKHGDDL 300
  301 RRSKTEISEM NRNISRLQAE IDALKGQRAT LEAAIADAEQ RGELAVKDAN AKLEDLKNAL 360
  361 QKAKQDMARQ LREYQELMNV KLALDIEIAT YRKLLEGEES RLESGMQNMS IHTKTTSGYA 420
  421 GGLSSSYGGL TSPGFSYGMS SFQPGFGSVG GSSTYSRTKA VVVKKIETRD GKLVSESSDI 480
  481 MSK

Type	Start	End	Confidence
Cytoplasmic	1	47	0.69
Transmembrane Helix	48	68	0.66
Non-Cytoplasmic	69	483	0.98