YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPP3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSYKYDKAI VPESKNGGSP ALNNNPRKGG SKRVLLICLD LFCLFMAALP FLIIETSTIK  60
   61 PYRRGFYCND ESIKYPLKVS ETINDAVLCA VGIVIAILRI ITGEFYRIYY LKEKSRSTIQ 120
  121 NPYVAALYKQ VGCFLFGCAI SQSFTDIAKV SIGRLRPHFL SVCDPDFSQI NCSEGYIQNY 180
  181 RCRGEDSKVQ EARKSFFSGH ASFSMFTMLY LVLYLQARFT WRGARLLRPL LQFTLLMMAF 240
  241 YTGLSRVSDY KHHPSDVLAG FAQGALVACC IVFFVSDLFK TKTTLSLPAP AIRREILSPV 300
  301 DIMDRSNHHN MV

Type	Start	End	Confidence
Cytoplasmic	1	33	0.96
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	85	0.90
Transmembrane Helix	86	103	0.83
Cytoplasmic	104	125	0.71
Transmembrane Helix	126	145	0.56
Non-Cytoplasmic	146	195	0.70
Transmembrane Helix	196	217	0.82
Cytoplasmic	218	225	0.67
Transmembrane Helix	226	245	0.87
Non-Cytoplasmic	246	256	0.67
Transmembrane Helix	257	279	0.87
Cytoplasmic	280	312	0.80