YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.97
Transmembrane Helix	54	75	0.92
Non-Cytoplasmic	76	141	0.94
Transmembrane Helix	142	163	0.88
Cytoplasmic	164	184	0.84
Transmembrane Helix	185	206	0.82
Non-Cytoplasmic	207	213	0.73
Transmembrane Helix	214	232	0.66
Cytoplasmic	233	241	0.64
Transmembrane Helix	242	265	0.87
Non-Cytoplasmic	266	315	0.74
Transmembrane Helix	316	336	0.90
Cytoplasmic	337	351	0.84
Transmembrane Helix	352	372	0.88
Non-Cytoplasmic	373	426	0.93
Transmembrane Helix	427	447	0.89
Cytoplasmic	448	454	0.72
Transmembrane Helix	455	478	0.77
Non-Cytoplasmic	479	499	0.81
Transmembrane Helix	500	520	0.74
Cytoplasmic	521	747	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLDEPFPD VGTYEDFHTI DWLREKSRDT DRHRKITSKS KESIWEFIKS LLDAWSGWVV  60
   61 MLLIGLLAGT LAGVIDLAVD WMTDLKEGVC LSAFWYSHEQ CCWTSNETTF EDRDKCPLWQ 120
  121 KWSELLLSQS EGASAYILNY LMYILWALLF AFLAVSLVRV FAPYACGSGI PEIKTILSGF 180
  181 IIRGYLGKWT LLIKTVTLVL VVSSGLSLGK EGPLVHVACC CGNFFSSLFS KYSKNEGKRR 240
  241 EVLSAAAAAG VSVAFGAPIG GVLFSLEEVS YYFPLKTLWR SFFAALVAAF TLRSINPFGN 300
  301 SRLVLFYVEY HTPWYMAELF PFILLGVFGG LWGTVFTRCN IAWCRRRKTT RLGKYPVLEV 360
  361 IVVTAITAII AYPNPYTRQS TSELISELFN DCGALESSQL CDYINDPNMT RPVDDIPDRP 420
  421 AGVGVYTAMW QLALALIFKI VITIFTFGMK IPSGLFIPSM AVGAMAGRMV GIGVEQLAYH 480
  481 HHDWIIFRNW CRPGADCVTP GLYAMVGAAA CLGGVTRMTV SLVVIMFELT GGLEYIVPLM 540
  541 AAAVTSKWVA DAFGKEGIYE AHIHLNGYPF LDVKDEFTHR TLATDVMRPR RGEPPLSVLT 600
  601 QDSMTVEDVE TLIKETDYNG FPVVVSRDSE RLIGFAQRRE LILAIKNARQ RQEGIVSNSI 660
  661 MYFTEEPPEL PANSPHPLKL RRILNLSPFT VTDHTPMETV VDIFRKLGLR QCLVTRSGRL 720
  721 LGIITKKDVL RHMAQMANQD PESIIFN