YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66730541, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.80
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	117	0.80
Transmembrane Helix	118	141	0.76
Cytoplasmic	142	221	0.79
Transmembrane Helix	222	241	0.93
Non-Cytoplasmic	242	248	0.72
Transmembrane Helix	249	271	0.90
Cytoplasmic	272	280	0.69
Transmembrane Helix	281	304	0.85
Non-Cytoplasmic	305	315	0.78
Transmembrane Helix	316	336	0.93
Cytoplasmic	337	349	0.84
Transmembrane Helix	350	372	0.84
Non-Cytoplasmic	373	380	0.65
Transmembrane Helix	381	403	0.90
Cytoplasmic	404	443	0.71
Transmembrane Helix	444	466	0.87
Non-Cytoplasmic	467	473	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVRKSRDSS QQLPGLRGQG GCTGFVGMLG TALLFISLTW GAQVMASANI STALGHRIGH  60
   61 YLSIGDGSVT EFDFPEKSEG IIVISSQYTG QANGTGPSPT LRVISLDTEV LTVKNVSAIT 120
  121 WGSGGGFVVS IHSGLAGLAP LHLQLMDSHE APPLLIEERR DFCIRVSPAE DLSSALNANL 180
  181 GHFSENPILY LLLPLIFVNK CSFGCKVELE VLKELLQSPQ PMLLGLLGQF LVMPFYAFLM 240
  241 AKVFMLPKAL ALGLIITCSS PGGGGSYLFS LLLGGDVTLA ISMTFISTVA ATGFLPLSSA 300
  301 IYSYLLSIHE TLHVPISKIL GTLLFIAIPI AAGVVIKSKL PKFSELLLQV IKPFSFVLLL 360
  361 GGLFLAYHMG VFILVGVRLP IVLVGFTVPL VGLLVGYSLA ICLKLPVAQR RTVSIEVGVQ 420
  421 NSLLALAMLQ LSLRRLQADY ASQAPFIVAL SGTSEMLVLV IGQFIYSSFF PVP