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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PLXA3_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTVCLLPLL FFTIGGCLGS SRPFRTFVVT DTTLTHLAVH RVTGEVFVGA VNRVFKLASN  60
   61 LTELRAHVTG PIEDNARCYP PPSMRVCSHR LVPVDNVNKL LLIDYAARRL VACGSIWQGI 120
  121 CQFLRLDDLF KLGEPHHRKE HYLSGAQEPD SMAGVIVEQG QGPSKLFVGT AVDGKSEYFP 180
  181 TLSSRKLIDD EDSGDMFSLV YQDEFVSSQI KIPSDTLSLY PAFDIYYIYG FVSASFVYFL 240
  241 TLQLDTQQTL LDTAGEKFFT SKIVRMCAGD SEFYSYVEFP IGCSWRGVEY RLVQSAHLAK 300
  301 PGLLLAQALG VPADEDVLFT IFSQGQKNRA NPPRQTILCL FTLSSINAHI RRRIQSCYRG 360
  361 EGTLALPWLL NKELPCINTP MQINGNFCGL VLNQPLGGLH VIEGLPLLAD STDGMASVAA 420
  421 YTYHQHSVVF IGTRSGNLKK VRVDGSQDAQ LYETVSVVQG TPILRDLLFS PDHRHIYLLS 480
  481 EKQVSQLPVE TCEQYLSCAA CLGSGDPHCG WCVLQHRCCR EGACPGASAP HGFAEELNKC 540
  541 IQVRVRPNNV SVTSSGVQLT VAMRNVPDLS LGVSCSFEEV TESEAILLPS GELRCPSPSL 600
  601 QELQTLTRGH GATHTVRLQL LSMETGVRFA GVDFVFYNCS ALQSCMSCVG SPYPCHWCKY 660
  661 RHVCTSHPHE CSFQEGRVHS PEGCPEILPR GDLLIPVGVM QPLTLRAKNL PQPQSGQKNY 720
  721 ECVVRVQGRQ HRVPAVRFNS SSVQCQNASY FYEGDEFGDT ELDFSVVWDG DFPIDKPPSF 780
  781 RALLYKCWAQ RPSCGLCLKA DPRFNCGWCI SEHRCQLRVH CPAPKSNWMH PSQKGARCSH 840
  841 PRITQIHPLT GPKEGGTRVT IVGENLGLTS REVGLRVAGV RCNSIPTEYV SAERIVCEME 900
  901 ESLVPSPPPG PAELCVGDCS ADFRTQSQQL YSFVTPTLDR VSPTRGPASG GTRLTISGTS 960
  961 LDAGSRVTVI IRDGECQFVR RDAEAIVCIS PISTLGPSQA PIILAIDHAN ISSTGVIYTY1020
 1021 TQDPTVTHLE PTWSIINGST SITVSGTHLL TVQEPRVRAK YRGIETTNTC QVINDTAMLC1080
 1081 KAPGIFLGHP QPRAQGEHPD EFGFLLDHVQ AARSLNRSSF TYYPDPSFEP LGPSGVLDVK1140
 1141 PGSHVVLKGK NLIPAAAGSS RLNYTVLIGG QPCALTVSDT QLLCDSPSQT GRQPVMVLVG1200
 1201 GLEFWLGTLH ITADRALTLP AMVGLAAGGG LLLLAITVVL VAYKRKTQDA DRTLKRLQLQ1260
 1261 MDNLESRVAL ECKEAFAELQ TDINELTNHM DGVQIPFLDY RTYAVRVLFP GIEAHPVLKE1320
 1321 LDTPPNVEKA LRLFGQLLHS RAFLLTFIHT LEAQSSFSMR DRGTVASLTM VALQSRLDYA1380
 1381 TGLLKQLLAD LIEKNLESKN HPKLLLRRTE SVAEKMLTNW FTFLLHKFLK ECAGEPLFLL1440
 1441 YCAIKQQMEK GPIDAITGEA RYSLSEDKLI RQQIDYKTLT LHCVCPESEG SAQVPVKVLN1500
 1501 CDSITQAKDK LLDTVYKGIP YSQRPKAEDM DLEWRQGRMA RIILQDEDIT TKIECDWKRI1560
 1561 NSLAHYQVTD GSLVALVPKQ VSAYNMANSF TFTRSLSRYE SLLRAASSPD SLRSRAPMLT1620
 1621 PDQEAGTKLW HLVKNHDHAD HREGDRGSKM VSEIYLTRLL ATKGTLQKFV DDLFETVFST1680
 1681 AHRGSALPLA IKYMFDFLDE QADQRQISDP DVRHTWKSNC LPLRFWVNVI KNPQFVFDIH1740
 1741 KNSITDACLS VVAQTFMDSC STSEHRLGKD SPSNKLLYAK DIPNYKSWVE RYYRDIAKMA1800
 1801 SISDQDMDAY LVEQSRLHAN DFNVLSALSE LYFYVTKYRQ EILTSLDRDA SCRKHKLRQK1860
 1861 LEQIITLVSS SS

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