YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	44	0.91
Non-Cytoplasmic	45	148	0.88
Transmembrane Helix	149	171	0.81
Cytoplasmic	172	177	0.90
Transmembrane Helix	178	197	0.94
Non-Cytoplasmic	198	207	0.69
Transmembrane Helix	208	226	0.84
Cytoplasmic	227	237	0.74
Transmembrane Helix	238	259	0.92
Non-Cytoplasmic	260	263	0.88
Transmembrane Helix	264	283	0.93
Cytoplasmic	284	348	0.97
Transmembrane Helix	349	371	0.89
Non-Cytoplasmic	372	377	0.82
Transmembrane Helix	378	398	0.91
Cytoplasmic	399	404	0.84
Transmembrane Helix	405	425	0.91
Non-Cytoplasmic	426	432	0.70
Transmembrane Helix	433	453	0.88
Cytoplasmic	454	464	0.68
Transmembrane Helix	465	486	0.90
Non-Cytoplasmic	487	493	0.76
Transmembrane Helix	494	514	0.95
Cytoplasmic	515	556	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTVDDVLEQ VGEFGWFQKQ AFLLLCLISA SLAPIYVGIV FLGFTPGHYC QNPGVAELSQ  60
   61 RCGWSQAEEL NYTVPGLGPS DEASFLSQCM RYEVDWNQST LDCVDPLSSL VANRSQLPLG 120
  121 PCEHGWVYDT PGSSIVTEFN LVCGDAWKVD LFQSCVNLGF FLGSLVVGYI ADRFGRKLCL 180
  181 LVTTLVTSVS GVLTAVAPDY TSMLLFRLLQ GMVSKGSWVS GYTLITEFVG SGYRRTTAIL 240
  241 YQMAFTVGLV GLAGVAYAIP DWRWLQLAVS LPTFLFLLYY WFVPESPRWL LSQKRTTRAV 300
  301 RIMEQIAQKN GKVPPADLKM LCLEEDASEK RSPSFADLFR TPNLRKHTVI LMYLWFSCAV 360
  361 LYQGLIMHVG ATGANLYLDF FYSSLVEFPA AFIILVTIDR IGRIYPIAAS NLVTGAACLL 420
  421 MIFIPHELHW LNVTLACLGR MGATIVLQMV CLVNAELYPT FIRNLGMMVC SALCDLGGIF 480
  481 TPFMVFRLME VWQALPLILF GVLGLTAGAM TLLLPETKGV ALPETIEEAE NLGRRKSKAK 540
  541 ENTIYLQVQT GKSSST