YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126540823, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	29	0.87
Non-Cytoplasmic	30	85	0.51
Transmembrane Helix	86	106	0.90
Cytoplasmic	107	119	0.39
Transmembrane Helix	120	148	0.72
Non-Cytoplasmic	149	163	0.50
Transmembrane Helix	164	188	0.81
Cytoplasmic	189	196	0.45
Transmembrane Helix	197	221	0.86
Non-Cytoplasmic	222	257	0.53
Transmembrane Helix	258	279	0.85
Cytoplasmic	280	299	0.90
Transmembrane Helix	300	322	0.91
Non-Cytoplasmic	323	330	0.86
Transmembrane Helix	331	355	0.89
Cytoplasmic	356	375	0.93
Transmembrane Helix	376	395	0.95
Non-Cytoplasmic	396	413	0.87
Transmembrane Helix	414	435	0.93
Cytoplasmic	436	444	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGLAAVVLSF WLNIYYIIII AWALYYLFSS FKAELPWQTC DNPWNTDRCF SNYSLLDTTN  60
   61 LSSAVTEFWE RNMHQLTNGL EEPGELRWPL VGTLALSWIL VYFSIWKGVE WTGKVVYFSA 120
  121 TYPYFMLFIL FFRGVTLPGA IDGVLFYITP NFNKLLKSEV WLDAATQIFF SYGLGLGSLI 180
  181 ALGSYNSFNN NVYRDSVIVC CINSCTSMFA GIVIFSIVGF MSYITKRPIE ELAASGHCPG 240
  241 LAFLAYPQAV TQLPMSSLWA ILFFSMLMML GLDSQFCTVE GFITALMDEY PTVLRKRKKI 300
  301 FILIVCLVSF IIGFSNITQG GLYVFKLFDY YSASGMCLLF LVFFETISIA WFYGAEKFYK 360
  361 NIEEMIGYRP CGFWKQCWIY FTPTICLGVF TFSAIEMTPL TLGKYVYPAW GQGVGWLMSL 420
  421 SSMVLIPGYI IYMFFSTKGN IRQA