YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOX1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNWLVNHWL SVLFLVSWLG LNIFLFVYVF LNYEKSDKYY YTREILGTAL ALARASALCL  60
   61 NFNSMVILIP VCRNLLSFLR GTCSFCNHTL RKPLDHNLTF HKLVAYMICI FTAIHIIAHL 120
  121 FNFERYSRSQ QAMDGSLASV LSSLFHPEKE DSWLNPIQSP NVTVMYAAFT SIAGLTGVVA 180
  181 TVALVLMVTS AMEFIRRNYF ELFWYTHHLF IIYIICLGIH GLGGIVRGQT EESMSESHPR 240
  241 NCSYSFHEWD KYERSCRSPH FVGQPPESWK WILAPIAFYI FERILRFYRS RQKVVITKVV 300
  301 MHPCKVLELQ MRKRGFTMGI GQYIFVNCPS ISFLEWHPFT LTSAPEEEFF SIHIRAAGDW 360
  361 TENLIRTFEQ QHSPMPRIEV DGPFGTVSED VFQYEVAVLV GAGIGVTPFA SFLKSIWYKF 420
  421 QRAHNKLKTQ KIYFYWICRE TGAFAWFNNL LNSLEQEMDE LGKPDFLNYR LFLTGWDSNI 480
  481 AGHAALNFDR ATDVLTGLKQ KTSFGRPMWD NEFSRIATAH PKSVVGVFLC GPPTLAKSLR 540
  541 KCCRRYSSLD PRKVQFYFNK ETF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.47
Transmembrane Helix	9	31	0.92
Non-Cytoplasmic	32	49	0.47
Transmembrane Helix	50	72	0.75
Cytoplasmic	73	97	0.60
Transmembrane Helix	98	121	0.85
Non-Cytoplasmic	122	164	0.71
Transmembrane Helix	165	188	0.90
Cytoplasmic	189	203	0.68
Transmembrane Helix	204	226	0.88
Non-Cytoplasmic	227	267	0.78
Transmembrane Helix	268	287	0.66
Cytoplasmic	288	314	0.91
Transmembrane Helix	315	336	0.78
Non-Cytoplasmic	337	395	0.92
Transmembrane Helix	396	418	0.78
Cytoplasmic	419	563	0.72