YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RPN1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.74
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPIVLLLL LWLALAPTPG SASSEAPPLV NEDVKRTVDL SSHLAKVTAE VVLAHPGGGS  60
   61 TARASSFVLA LEPELESRLA HLGVQVKGED EEDNNLEVRE TKMKGKSGRF FTVKLPVALD 120
  121 PGSKISIVVE TVYTHVLHPY PTQITQSEKQ FVVFEGNHYF YSPYPTKTQT MRVRLASRNV 180
  181 ESHTKLGNPS RSEDILDYGP FKDIPAYSQD TFKVHYENNS PFLTITSMTR VIEVSHWGNI 240
  241 AVEENVDLKH TGAVLKGPFS RYDYQRQPDS GISSIRSFKT ILPAAAQDVY YRDEIGNVST 300
  301 SHLLILDDSV EMEIRPRFGL FGGWKTHYIV GYNLPSYEYL YNLGDQYALK MRFVDHVFDE 360
  361 QVIDSLTVKI ILPEGAKNIQ VDSPYDISRA PDELHYTYLD TFGRPVIVAY KKNLVEQHIQ 420
  421 DIVVHYTFNK VLMLQEPLLV VAAFYILFFT VIIYVRLDFS ITKDPAAEAR MKVACITEQV 480
  481 LTLVNKRLGL YRHFDETVNR YKQSRDISTL NSGKKSLETE HKAVTSEIAV LQSRLKTEGS 540
  541 DLCDRVSEMQ KLDAQVKELV LKSAVEAERL VAGKLKKDTY IENEKLSSGK RQELVTKIDH 600
  601 ILDAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle