YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHAG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPAGSALSS GQMQMQMVLW GSLAAVAMFF LITFLILLCS SCDRDKKPRQ HSGDHESLMN  60
   61 VPSDKEMFSH SATSLTTDAL ASSEQNGVLT NGDILSEDST MTCMQHYEEV QTSASDLLDS 120
  121 QDSTGKAKCH QSRELPRIPP ENAVDAMLTA RAADGDSGPG VEGPYEVLKD SSSQENMVED 180
  181 CLYETVKEIK EVADKSQGGK SKSTSALKEL QGAHAEGKAD FAEYASVDRN KKCRHSTNAE 240
  241 SILGTSSDLD EETPPPVPVK LLDENANLPE KGEHGAEEQA PEAPSGHSKR FSSLSYKSRE 300
  301 EDPTLTEEEI SAMYSSVNKP GQSAHKPGPE STCQCPQGPP QRSSSSCNDL YATVKDFEKT 360
  361 PNSISMLPPA RRPGEEPEPD YEAIQTLNRE DDKVPLGTNG HLVPKENDYE SIGDLQQGRD 420
  421 VTRL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.44
Transmembrane Helix	17	39	0.88
Non-Cytoplasmic	40	424	0.51