YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAAR4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPDLWYSP ETQFCFAAAN NSCPRKARPA LVVCAMYLVM IGAIVMTMLG NMVVIISIAH  60
   61 FKQLHSPTNF LILSMATTDF LLSCVVMPFS MVRSIESCWY FGDLFCKVHS CCDIMLCTTS 120
  121 IFHLCFISVD RHYAVCDPLH YVTQITVGVV GVFLLISWSV PILFAFGLVF SELNLIGAED 180
  181 FVAAIDCTGL CVLIFNKLWG VLASFIAFFL PGAIMVGIYI HIFTVARKHA RKIGPGPRTK 240
  241 RALSESKMKA TSGKESKATK TLSIVMGVFV LCWLPFFVLT ITDPFIGFTT PEDLYNVFLW 300
  301 LGYFNSTFNP IIYGMFYPWF RKALRMIVTG TIFRSDSSTS SLHPAHP

Type	Start	End	Confidence
Cytoplasmic	1	33	0.89
Transmembrane Helix	34	59	0.87
Non-Cytoplasmic	60	69	0.80
Transmembrane Helix	70	92	0.88
Cytoplasmic	93	107	0.79
Transmembrane Helix	108	127	0.64
Non-Cytoplasmic	128	144	0.56
Transmembrane Helix	145	170	0.83
Cytoplasmic	171	175	0.56
Transmembrane Helix	176	195	0.59
Non-Cytoplasmic	196	201	0.65
Transmembrane Helix	202	223	0.91
Cytoplasmic	224	260	0.93
Transmembrane Helix	261	281	0.91
Non-Cytoplasmic	282	296	0.87
Transmembrane Helix	297	317	0.92
Cytoplasmic	318	347	0.93