YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34880068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRRGGGQG QPPSVSPSPG SSGSLSTDRT CTHNICMVSD FFYPNMGGVE SHIYQLSQCL  60
   61 IERGHKVITV THAYGNRKGV RYLTNGLKVY YLPLRVMYNQ STATTLFHSL PLLRYIFVRE 120
  121 RITIIHSHSS FSAMAHDALF HAKTMGLQTV FTDHSLFGFA DVSSVLTNKL LTVSLCDTNH 180
  181 IICVSYTSKE NTVLRAALNP EIVSVIPNAV DPTDFTPEPF RRHDSVITVV VVSRLVYRKG 240
  241 TDLLSGIIPE LCQKYQELNF LIGGEGPKRI ILEEVRERYQ LHDRVQLLGA LEHKDVRNVL 300
  301 VQGHIFLNTS LTEAFCMAIV EAASCGLQVV STKVGGIPEV LPENLIILCE PSVKSLCEGL 360
  361 EKAIFQVKSG TLPAPENIHN VVKTFYTWRN VAERTEKVYE RVSKESVLPM HKRLDRLISH 420
  421 CGPVTGYIFA LLAVLSYLFL IFLQWMTPDS VIDVAIDATG PRRAWTHQWP RDKKRDENDK 480
  481 VSKSR

Type	Start	End	Confidence
Cytoplasmic	1	419	0.55
Transmembrane Helix	420	443	0.82
Non-Cytoplasmic	444	485	0.61