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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: B3A4_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPGQEDFE GSDAHENVCS EQLDGDLGPG SGLDGPSDID NGKAQGCKDP LLFIQLNELL  60
   61 GWPQALEWRE TGRWLLFEEK LDIGAGRWSA PHVPTLALPS LQKLRGLLAE GIVLLDCPAR 120
  121 SLLELVEQVV RVESLSPELR GQLQALLLQR PQHHIQTTGI RPCRRSNAFR KASRDEDTLL 180
  181 KHQNPLRQKL PPGAEAAAVL AGELGFLEQP LAAFVRLQNP VVLEPLTEVV LPSRFFCLLL 240
  241 GPSTLGRSYH ETGRAAAVLL SDPQFQWSVR RASNLHDLLA ALDAFLQEVT ALPPGRWDRT 300
  301 ARIPPPKCLP SQHKRFPSKL QEVTSLSRQS AALAENKHHH GPHTPIPELQ RTGRLFGGLV 360
  361 QDVRRKACWY PSDFLDALHP QCFSAVLYIY LATVTNAITF GGLLGDATEG AQGVLESFLG 420
  421 TAVAGATFCL MAGQPLTILS STGPVLVFER LLFSFSRDYS LDYLPFRLWV GIWVATFCLA 480
  481 LVATEASLLV RYFTRFTEEG FCALISLIFI YDAVGKMLNL IRAYPIQRPG SPAYSCFCQY 540
  541 PGTGGNASEF DSTMFKDTED VLNVHPGLVN ASFLPPSECI RQGGYPRGPS CHTVPDIAFF 600
  601 SLLLFFTSFL CAIALKHVKN SRLFPSVVRK VFSDFSSVLA ILLGCGLDAF LGLATPKLLV 660
  661 PTEFKPTLPG RGWLVSPFGA NPWWLSVAAA LPALLLSILI FMDQQITAVI LNRAEYRLQK 720
  721 GAGFHLDLFC VAVLMLFTSA LGLPWYVSAT VISLAHMDSL RRESKACVPG EDPNFLGIRE 780
  781 QRLTGLVVFI LTGVSIFLAP VLKFIPMPVL YGIFLYMGVA ALSSMQFMKR VQLLLMPRKH 840
  841 QPDVLLLRHV PLIRVHLFTA IQLACLGLLW VIKSTPAAIV FPLMLLGLVA VRKALEWIFS 900
  901 PQELLWLDEL MPEEEKTIPE NRPEPEHLFS GNDSENSELM YQPKAPEINI SVN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle