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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NU155_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSMLGSMMV ASTSAPSLQE ALENAGRLID RQLQEDRMYP DLSELLMVSA PNSPTVSGMS  60
   61 DMDYPLQGPG LLSVPSLPEI STIRRVPLRL SWLNSLDTCS VTAMMGVFPP ISRAWLTIDS 120
  121 DIFMWNYEDG GDLAYFDGLS ETILAVGLVK PKAGIFQPHV RHLLVLATPV DIVILGLSYA 180
  181 NVQTGSGILN DSVCGGLQLL PDPLYSLPTD NTYLLTITST DNGRIFLAGK DGCLYEVAYQ 240
  241 AEAGWFSQRC RKINHSKSSL SFLVPSLLQF TFSEDDPIVQ IEIDNSRNIL YTRSEKGVIQ 300
  301 VYDLGHDGQG MSRVASVSQN AIVCAAGNIA RTIDRSVFKP IVQIAVIENS ESLDCQLLAV 360
  361 THAGVRLYFS TCPFRQPLAR PNTLTLVHVR LPPGFSASST VEKPSKVHKA LYSKGILLMT 420
  421 ASENEDNDIL WCVNHDTFPF QKPMMETQMT TRVDGHSWAL SAIDELKVDK IITPLNKDHI 480
  481 PITDSPVVVQ QHMLPPKKFV LLSAQGSLMF HKLRPVDQLR HLLVSNVGGD GEEIERFFKL 540
  541 HQEDQACATC LILACSTAAC DREVSAWATR AFFRYGGEAQ MRFPATLPTP SNVGPILGSP 600
  601 MYSSSPVPTG SPYPNPSSLG TPSHGAQPPT MSTPMSAVGN PAMQAASLSG LTGPEIVYSG 660
  661 KHNGICIYFS RIMGNIWDAS LVVERVFKSS NREITAIESS VPIQLLESVL QELKGLQEFL 720
  721 DRNSQFSGGP LGNPNTTAKV QQRLLGVMRP ENGNTQQMQQ ELQRKFHEAQ LSEKISLQAI 780
  781 QQLVRKSYQA LALWKLLCEH QFTVIVGELQ KEFQEQLKIT TFKDLVIREK EVTGALIASL 840
  841 INCYIRDNAA VDGISLHLQD TCPLLYSTDD AVCSKANELL QRSRQVQSKS ERERMLRESL 900
  901 KEYQKISNQV DLPSVCAQYR QVRFYEGVVE LSLTAAEKKD PQGLGLHFYK HGEPEEDVVG 960
  961 LQTFQERLNS YKCITDTLQE LVNQSKAAPQ SPSVPKKPGP PVLSSDPNML SNEEAGHHFE1020
 1021 QMLKLAQRSK DELFSIALYN WLIQADLADK LLQIASPFLE PHLVRMAKVD QNRVRYMDLL1080
 1081 WRYYEKNRSF SSAARVLSKL ADMHSTEISL QQRLEYIARA ILSAKSSTAI SSIAADGEFL1140
 1141 HELEEKMEVA RIQLQIQETL QRQYSHHSSV QDAISQLDSE LMDITKLYGE FADPFKLAEC1200
 1201 KLAIIHCAGY SDPILVHTLW QDIIEKELSD SVTLSSSDRM HALSLKLVLL GKIYAGTPRF1260
 1261 FPLDFIVQFL EQQVCTLNWD VGFVIQTMNE IGVPLPRLLE VYDQLFKSRD PFWNRVKSPL1320
 1321 HLLDCIHVLL TRYVENPSLV LNCERRRFTN LCLDAVCGYL VELQSMSSSV AVQAITGNFK1380
 1381 SLQAKLERLH 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle