YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP2J3_RAT
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTAGSLLG AIWTVLHLRI LLLAAVTFLF LADFLKHRRP KNYPPGPWRL PLVGCLFHLD  60
   61 PKQPHLSLQQ FVKKYGNVLS LDFANIPSVV VTGMPLIKEI FTQMEHNFLN RPVTLLRKHL 120
  121 FNKNGLIFSS GQTWKEQRRF ALMTLRNFGL GKKSLEQRIQ EEAYHLVEAI KDEGGLPFDP 180
  181 HFNINKAVSN IICSVTFGER FEYHDSQFQE MLRLLDEAMC LESSMMCQLY NIFPRILQYL 240
  241 PGSHQTLFSN WRKLKLFISD IIKNHRRDWD PDEPRDFIDA FLKEMAKYPD KTTTSFNEEN 300
  301 LICSTLDLFF AGTETTSTTL RWALLCMALY PEVQEKMQAE IDRVIGQGRQ PNLADRDSMP 360
  361 YTNAVIHEVQ RIGNIIPFNV PREVAVDTYL AGFNLPKGTM ILTNLTALHR DPKEWATPDT 420
  421 FNPEHFLENG QFKKRESFLP FSMGKRACLG EQLARSELFI FITSLIQKFT FKPPVNEKLS 480
  481 LQFRMSVTIS PVSHRLCAIP RL

Type	Start	End	Confidence
Cytoplasmic	1	8	0.31
Transmembrane Helix	9	32	0.58
Non-Cytoplasmic	33	502	0.83