YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S15A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	53	0.91
Transmembrane Helix	54	74	0.95
Cytoplasmic	75	82	0.80
Transmembrane Helix	83	103	0.90
Non-Cytoplasmic	104	119	0.90
Transmembrane Helix	120	143	0.88
Cytoplasmic	144	162	0.93
Transmembrane Helix	163	184	0.93
Non-Cytoplasmic	185	199	0.86
Transmembrane Helix	200	223	0.86
Cytoplasmic	224	278	0.98
Transmembrane Helix	279	297	0.89
Non-Cytoplasmic	298	329	0.89
Transmembrane Helix	330	349	0.93
Cytoplasmic	350	360	0.80
Transmembrane Helix	361	380	0.89
Non-Cytoplasmic	381	589	0.90
Transmembrane Helix	590	609	0.63
Cytoplasmic	610	619	0.66
Transmembrane Helix	620	643	0.87
Non-Cytoplasmic	644	650	0.62
Transmembrane Helix	651	674	0.88
Cytoplasmic	675	710	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMSKSRGCF GYPLSIFFIV VNEFCERFSY YGMRALLVLY FRNFLGWDDD LSTAIYHTFV  60
   61 ALCYLTPILG ALIADSWLGK FKTIVSLSIV YTIGQAVISV SSINDLTDHD HDGSPNNLPL 120
  121 HVALSMIGLA LIALGTGGIK PCVSAFGGDQ FEEGQEKQRN RFFSIFYLAI NAGSLLSTII 180
  181 TPILRVQQCG IHSQQACYPL AFGVPAALMA VALIVFVLGS GMYKKFQPQG NIMGKVAKCI 240
  241 RFAIKNRFRH RSKAFPKRNH WLDWAKEKYD ERLISQIKIM TKVMFLYIPL PMFWALFDQQ 300
  301 GSRWTLQATT MTGKIGTIEI QPDQMQTVNA ILIVIMVPIV DAVVYPLIAK CGFNFTSLKK 360
  361 MTVGMFLASM AFVVAAIVQV EIDKTLPVFP SGNQVQIKVL NIGNNDMAVY FPGKNVTVAQ 420
  421 MSQTDTFMTF DVDQLTSINV SSPGSPGVTT VAHEFEPGHR HTLLVWGPNL YRVVKDGLNQ 480
  481 KPEKGENGIR FVSTLNEMIT IKMSGKVYEN VTSHSASNYQ FFPSGQKDYT INTTEIAPNC 540
  541 SSDFKSSNLD FGSAYTYVIR SRASDGCLEV KEFEDIPPNT VNMALQIPQY FLLTCGEVVF 600
  601 SVTGLEFSYS QAPSNMKSVL QAGWLLTVAI GNIIVLIVAE AGHFDKQWAE YVLFASLLLV 660
  661 VCIIFAIMAR FYTYINPAEI EAQFDEDEKK KGVGKENPYS SLEPVSQTNM