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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNTN2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTHARKKAS LLLLVLATVA LVSSPGWSFA QGTPATFGPI FEEQPIGLLF PEESAEDQVT  60
   61 LACRARASPP ATYRWKMNGT DMNLEPGSRH QLMGGNLVIM SPTKTQDAGV YQCLASNPVG 120
  121 TVVSKEAVLR FGFLQEFSKE ERDPVKTHEG WGVMLPCNPP AHYPGLSYRW LLNEFPNFIP 180
  181 TDGRHFVSQT TGNLYIARTN ASDLGNYSCL ATSHMDFSTK SVFSKFAQLN LAAEDPRLFA 240
  241 PSIKARFPPE TYALVGQQVT LECFAFGNPV PRIKWRKVDG SLSPQWATAE PTLQIPSVSF 300
  301 EDEGTYECEA ENSKGRDTVQ GRIIVQAQPE WLKVISDTEA DIGSNLRWGC AAAGKPRPMV 360
  361 RWLRNGEPLA SQNRVEVLAG DLRFSKLSLE DSGMYQCVAE NKHGTIYASA ELAVQALAPD 420
  421 FRQNPVRRLI PAARGGEISI LCQPRAAPKA TILWSKGTEI LGNSTRVTVT SDGTLIIRNI 480
  481 SRSDEGKYTC FAENFMGKAN STGILSVRDA TKITLAPSSA DINVGDNLTL QCHASHDPTM 540
  541 DLTFTWTLDD FPIDFDKPGG HYRRASAKET IGDLTILNAH VRHGGKYTCM AQTVVDGTSK 600
  601 EATVLVRGPP GPPGGVVVRD IGDTTVQLSW SRGFDNHSPI AKYTLQARTP PSGKWKQVRT 660
  661 NPVNIEGNAE TAQVLGLMPW MDYEFRVSAS NILGTGEPSG PSSKIRTKEA VPSVAPSGLS 720
  721 GGGGAPGELI INWTPVSREY QNGDGFGYLL SFRRQGSSSW QTARVPGADA QYFVYGNDSI 780
  781 QPYTPFEVKI RSYNRRGDGP ESLTALVYSA EEEPRVAPAK VWAKGSSSSE MNVSWEPVLQ 840
  841 DMNGILLGYE IRYWKAGDNE AAADRVRTAG LDTSARVTGL NPNTKYHVTV RAYNRAGTGP 900
  901 ASPSADAMTV KPPPRRPPGN ISWTFSSSSL SLKWDPVVPL RNESTVTGYK MLYQNDLHPT 960
  961 PTLHLTSKNW IEIPVPEDIG HALVQIRTTG PGGDGIPAEV HIVRNGGTSM MVESAAARPA1020
 1021 HPGPAFSCMV ILMLAGYQKL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle