YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FFAR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPPQLSFA LYVSAFALGF PLNLLAIRGA VSHAKLRLTP SLVYTLHLAC SDLLLAITLP  60
   61 LKAVEALASG VWPLPLPFCP VFALAHFAPL YAGGGFLAAL SAGRYLGAAF PFGYQAIRRP 120
  121 CYSWGVCVAI WALVLCHLGL ALGLEAPRGW VDNTTSSLGI NIPVNGSPVC LEAWDPDSAR 180
  181 PARLSFSILL FFLPLVITAF CYVGCLRALV HSGLSHKRKL RAAWVAGGAL LTLLLCLGPY 240
  241 NASNVASFIN PDLEGSWRKL GLITGAWSVV LNPLVTGYLG TGPGQGTICV TRTPRGTIQK 300
  301

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.89
Transmembrane Helix	8	27	0.94
Cytoplasmic	28	42	0.73
Transmembrane Helix	43	64	0.86
Non-Cytoplasmic	65	81	0.83
Transmembrane Helix	82	106	0.82
Cytoplasmic	107	120	0.87
Transmembrane Helix	121	141	0.96
Non-Cytoplasmic	142	185	0.93
Transmembrane Helix	186	210	0.85
Cytoplasmic	211	221	0.90
Transmembrane Helix	222	242	0.94
Non-Cytoplasmic	243	262	0.89
Transmembrane Helix	263	282	0.77
Cytoplasmic	283	300	0.72