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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCNNA_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDHTRAPEL NIDLDLHASN SPKGSMKGNQ FKEQDPCPPQ PMQGLGKGDK REEQGLGPEP  60
   61 SAPRQPTEEE EALIEFHRSY RELFQFFCNN TTIHGAIRLV CSKHNRMKTA FWAVLWLCTF 120
  121 GMMYWQFALL FEEYLSYPVS LNINLNSDKL VFPAVTVCTL NPYRYTEIKE ELEELDRITE 180
  181 QTLFDLYKYN SSYTRQAGAR RRSSRDLLGA FPHPLQRLRT PPPPYSGRTA RSGSSSVRDN 240
  241 NPQVDRKDWK IGFQLCNQNK SDCFYQTYSS GVDAVREWYR FHYINILSRL SDTSPALEEE 300
  301 ALGNFIFTCR FNQAPCNQAN YSKFHHPMYG NCYTFNDKNN SNLWMSSMPG VNNGLSLTLR 360
  361 TEQNDFIPLL STVTGARVMV HGQDEPAFMD DGGFNLRPGV ETSISMRKEA LDSLGGNYGD 420
  421 CTENGSDVPV KNLYPSKYTQ QVCIHSCFQE NMIKKCGCAY IFYPKPKGVE FCDYRKQSSW 480
  481 GYCYYKLQGA FSLDSLGCFS KCRKPCSVIN YKLSAGYSRW PSVKSQDWIF EMLSLQNNYT 540
  541 INNKRNGVAK LNIFFKELNY KTNSESPSVT MVSLLSNLGS QWSLWFGSSV LSVVEMAELI 600
  601 FDLLVITLLM LLRRFRSRYW SPGRGARGAR EVASTPASSF PSRFCPHPTS PPPSLPQQGM 660
  661 TPPLALTAPP PAYATLGPSA PPLDSAAPDC SACALAAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle