YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22654309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.76
Transmembrane Helix	54	77	0.87
Non-Cytoplasmic	78	95	0.60
Transmembrane Helix	96	120	0.82
Cytoplasmic	121	129	0.49
Transmembrane Helix	130	154	0.88
Non-Cytoplasmic	155	190	0.49
Transmembrane Helix	191	205	0.19
Cytoplasmic	206	238	0.65
Transmembrane Helix	239	259	0.74
Non-Cytoplasmic	260	278	0.76
Transmembrane Helix	279	297	0.91
Cytoplasmic	298	315	0.74
Transmembrane Helix	316	339	0.89
Non-Cytoplasmic	340	346	0.82
Transmembrane Helix	347	371	0.83
Cytoplasmic	372	387	0.83
Transmembrane Helix	388	413	0.83
Non-Cytoplasmic	414	427	0.72
Transmembrane Helix	428	454	0.80
Cytoplasmic	455	551	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDPPKADP KGVVAVDPTA NCGSGLRSRE DQGAKAGGCC SSRDQVCRCL RANLLVLLTV  60
   61 AAAVAGVVLG LGVSAAGGAE ALGHARFTAF AFPGELLLRL LEMIILPLVV CSLIGGAASL 120
  121 DPSALGRLGA WALLFFLVTT LLASALGVGL ALALKPGVAV SAINCSVGDG SGHRTPPKEV 180
  181 LDSFLDLMRN IFPSNLVSAA FRSYSTSYEL RTSEKQLTTD CAHRETNATL VQVGGEVEGM 240
  241 NILGLVVFAI VFGVALRKLG PEGELLIRFF NSFNDATMVL VSWIMWYAPV GILFLVASKI 300
  301 VEMEDIRQLF IRLGKYVLCC LLGHAIHGLL VLPLIYFVFT RQNPYRFLWG IMTPLATAFG 360
  361 TSSSSATLPL MMKCVEEKNG VAKHISRFIL PIGATVNMDG AALFQCVAAV FIAQLNGVSL 420
  421 DFVKIITILV TATASSVGAA GIPAGGVLTL AIILEAVSLP VKDISLILAV DWLVDRSCTI 480
  481 INVEGDAFGA GLLQSYVDRT KTPSSEPELI QVKNETSLNP LPLAPEEGNP LLKQYRGPAG 540
  541 DAAACEKESV M