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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSPG4_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSPGHPLS APALALILTL ALLVRSTAPA SFFGENHLEV PVPSALTRVD LLLQFSTSQP  60
   61 EALLLLAAGQ TDHLLLQLQS GHLQVRLALG QNELSLQTPA DTVLSDSTTH TVVLTVSNSW 120
  121 AVLSVDGVLN TSAPIPKASH LKVPYGLFVG SSGSLDLPYL KGISRPLRGC LHSAILNGRN 180
  181 LLRPLTPDVH EGCAEEFSAG DEVGLGFSGP HSLAAFPAWS TREEGTLEFT LTTRSQQAPL 240
  241 AFQAGDKRGN FIYVDIFEGH LRAVVEKGQG TMLLRNSVPV ADGQPHEVSV HIDVHRLEIS 300
  301 VDQYPTRTFN RGVLSYLEPR GSLLLGGLDT EASRHLQEHR LGLTPGAANI SLVGCIEDFS 360
  361 VNGRRLGLRD AWLTRDMAAG CRPEEDEYEE EVYGPFEAFS TLAPEAWPVM DLPEPCVPEP 420
  421 GLPAVFANFT QLLTISPLVV AEGGTAWLEW RHVQPTLDLT EAELRKSQVL FSVSQGARHG 480
  481 ELELDIPGAQ TRKMFTLLDV VNRKARFVHD GSEDTSDQLM LEVSVTSRAP VPSCLRRGQI 540
  541 YILPIQVNPV NDPPRIVFPH GSLMVILEHT QKPLGPEIFQ AYDPDSACEG LTIQLLGVSA 600
  601 SVPVEHRDQP GEPVTEFSCR DLEAGNIVYV HRGGPAQDLT FRVSDGMQAS GPATLKVVAV 660
  661 RPAIQILHNT GLRLAQGSAA AILPANLSVE TNAVGQDVSV LFRVTGTLQF GELQKQGAGG 720
  721 VEGTEWWDTL AFHQRDVEQG RVRYLSTDPQ HHTQDTVEDL TLEVQVGQET LSNLSFPVTI 780
  781 QRATVWMLQL EPLHTQNPHQ ETLTSAHLEA SLEEEGEGGP YPHIFHYELV QAPRRGNLLL 840
  841 QGTRLSDGQS FSQSDLQAGR VTYRATTRTS EAAEDSFRFR VTSPPHFSPL YTFPIHIGGD 900
  901 PNAPVLTNVL LMVPEGGEGV LSADHLFVKS LNSASYLYEV MEQPHHGSLA WRDPKGRATP 960
  961 VTSFTNEDLL HGRLVYQHDD SETIEDDIPF VATRQGEGSG DMAWEEVRGV FRVAIQPVND1020
 1021 HAPVQTISRV FHVARGGQRL LTTDDVAFSD ADSGFSDAQL VLTRKDLLFG SIVAMEEPTR1080
 1081 PIYRFTQEDL RKKQVLFVHS GADHGWLQLQ VSDGQHQATA MLEVQASEPY LHVANSSSLV1140
 1141 VPQGGQGTID TAVLHLDTNL DIRSGNEVHY HVTAGPHWGQ LLRDGQSVTS FSQRDLLDGA1200
 1201 ILYSHNGSLS PQDTLALSVA AGPVHTSTVL QVTIALEGPL APLQLVQHKR IYVFQGEAAE1260
 1261 IRRDQLEVVQ EAVLPADIMF SLRSPPNAGY LVMVSHGASA DGPPSLDPVQ RFSQEAINSG1320
 1321 RVLYLHSRPG AWSDSFSLDV ASGLGDPLEG ISVELEVLPT VIPLDVQNFS VPEGGTRTLA1380
 1381 PPLIQITGPY LGTLPGLVLQ VLEPPQHGAL QKEDRPQDGT LSTFSWREVE EQLIRYVHDG1440
 1441 SETQTDGFIL LANASEMDRQ SQPMAFTITI LPVNDQPPVI TTNTGLQIWE GAIVPIPPEA1500
 1501 LRGIDSDSGP EDLVYTIEQP SNGRIALRVA PDAEAHRFTQ AQLDSGLVLF SHRGALEGGF1560
 1561 HFDLSDGVHT SPGHFFRVVA QKQVLLSLEG SRKLTVCPES VQPLSSQSLS ASSSTGSDPR1620
 1621 HLLYQVVRGP QLGRLLHAQQ GSAEEALVNF TQAEVNAGNI LYEHEISSEP FWEAHDTIGL1680
 1681 LLSSSPARDL AATLAVTVSF DAACPQRPSR LWRNKGLWVP EGQRAKITVA ALDAANLLAS1740
 1741 VPASQRGRHD VLFQITQFPT RGQLLVSEEP LHARRPHFLQ SELTAGQLVY AHGGGGTQQD1800
 1801 GFRFRAHLQG PTGASVAGPQ TSEAFVITVR DVNERPPQPQ ASIPLRITRG SRAPVSRAQL1860
 1861 SVVDPDSAPG EIEYEVQRAP HNGFLSLAGD NTGPVTHFTQ ADVDAGRLAF VANGSSVAGV1920
 1921 FQLSMSDGAS PPIPMSLAVD VLPSTIEVQL RAPLEVPQAL GRSSLSRQQL QVISDREEPD1980
 1981 VAYRLTQGPL YGQVLVGGQP ASAFSQLQVD QGDVVFAFTN FSSSQDHFKV LALARGVNAS2040
 2041 ATVNVTVQAL LHVWAGGPWP QGTTLRLDPT VLDASELANR TGSMPRFRLL EGPRYGRVVR2100
 2101 VSQGRAESRT NQLVEDFTQQ DLEEGRLGLE VGRPEGRSTG PTGDRLTLEL QATGVPPAVA2160
 2161 LLDFATEPYH AAKFYKVTLL SVPEAARTET EKTGKSTPTG QPGQAASSPM PTVAKSGFLG2220
 2221 FLEANMFSVI IPVCLVLLLL ALILPLLFYL RKRNKTGKHD VQVLTAKPRN GLAGDTETFR2280
 2281 KVEPGQAIPL TTVPGQGPPP GGQPDPELLQ FCRTPNPALR NGQYWV

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