YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	5HT3B_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLWSCLLV AVVGILGTAT PQPGNSSLHR LTRQLLQQYH KEVRPVYNWA EATTVYLDLC  60
   61 VHAVLDVDVQ NQKLKTSMWY REVWNDEFLS WNSSLFDDIQ EISLPLSAIW APDIIINEFV 120
  121 DVERSPDLPY VYVNSSGTIR NHKPIQVVSA CSLQTYAFPF DIQNCSLTFN SILHTVEDID 180
  181 LGFLRNQEDI ENDKRSFLND SEWQLLSVTS TYHIRQSSAG DFAQIRFNVV IRRCPLAYVV 240
  241 SLLIPSIFLM LVDLGSFYLP PNCRARIVFK TNVLVGYTVF RVNMSDEVPR SAGCTSLIGV 300
  301 FFTVCMALLV LSLSKSILLI KFLYEERHSE QERPLMCLRG DSDANESRLY LRAPCAEDTE 360
  361 SPVRQEHQVP SDTLKDFWFQ LQSINNSLRT RDQVYQKEVE WLAILCHFDQ LLFRIYLAVL 420
  421 GLYTVTLCSL WALWSRM

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	235	0.97
Transmembrane Helix	236	257	0.80
Cytoplasmic	258	266	0.68
Transmembrane Helix	267	284	0.42
Non-Cytoplasmic	285	291	0.55
Transmembrane Helix	292	313	0.87
Cytoplasmic	314	411	0.61
Transmembrane Helix	412	434	0.92
Non-Cytoplasmic	435	437	0.57