YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LEPR_RAT
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCQKFYVVL LHWEFLYVIT ALNLAYPTSP WRFKLFCAPP STTDDSFLSP AGVPNNTSSL  60
   61 KGASEALVEA KFNSTGIYVS ELSKTIFHCC FGNEQGQNCS ALTGNTEGKT LASVVKPLVF 120
  121 RQLGVNWDIE CWMKGDLTLF ICHMEPLLKN PFKNYDSKVH LLYDLPEVID DLPLPPLKDS 180
  181 FQTVQCNCSV RECECHVPVP RAKVNYALLM YLEITSAGVS FQSPLMSLQP MLVVKPDPPL 240
  241 GLRMEVTDDG NLKISWDSQT KAPFPLQYQV KYLENSTIVR EAAEIVSDTS LLVDSVLPGS 300
  301 SYEVQVRSKR LDGSGVWSDW SLPQLFTTQD VMYFPPKILT SVGSNASFCC IYKNENQTIS 360
  361 SKQIVWWMNL AEKIPETQYN TVSDHISKVT FSNLKATRPR GKFTYDAVYC CNEQACHHRY 420
  421 AELYVIDVNI NISCETDGYL TKMTCRWSPS TIQSLVGSTV QLRYHRRSLY CPDNPSIRPT 480
  481 SELKNCVLQT DGFYECVFQP IFLLSGYTMW IRINHSLGSL DSPPTCVLPD SVVKPLPPSN 540
  541 VKAEITINTG LLKVSWEKPV FPENNLQFQI RYGLNGKEIQ WKTHEVFDAK SKSASLPVSD 600
  601 LCAVYVVQVR CRRLDGLGYW SNWSSPAYTL VMDVKVPMRG PEFWRIMDGD ITKKERNVTL 660
  661 LWKPLMKNDS LCSVRRYVVK HRTAHNGTWS QDVGNQTNLT FLWAESAHTV TVLAINSIGA 720
  721 SLVNFNLTFS WPMSKVNAVQ SLSAYPLSSS CVILSWTLSP NDYSLLYLVI EWKNLNDDDG 780
  781 MKWLRIPSNV NKYYIHDNFI PIEKYQFSLY PVFMEGVGKP KIINGFTKDD IAKQQNDAGL 840
  841 YVIVPIIISS CVLLLGTLLI SHQRMKKLFW DDVPNPKNCS WAQGLNFQKP ETFEHLFTKH 900
  901 AESVIFGPLL LEPEPVSEEI SVDTAWKNKD EMVPAAMVSL LLTTPDSTRG SICISDQCNS 960
  961 ANFSGAQSTQ GTCEDECQSQ PSVKYATLVS NVKTVETDEE QGAIHSSVSQ CIARKHSPLR1020
 1021 QSFSSNSWEI EAQAFFLLSD HPPNVISPQL SFSGLDELLE LEGNFPEENH GEKSVYYLGV1080
 1081 SSGNKRENDM LLTDEAGVLC PFPAHCLFSD IRILQESCSH FVENNLNLGT SGKNFVPYMP1140
 1141 QFQSCSTHSH KIIENKMCDL TV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle