YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8163934, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRLQDELS AFFFEYDTPR MVLVRNKKVG VIFRLIQLVV LVYVIGWVFV YEKGYQTSSD  60
   61 LISSVSVKLK GLAVTQLQGL GPQVWDVADY VFPAHGDSSF VVMTNFIVTP QQTQGHCAEN 120
  121 PEGGICQDDS GCTPGKAERK AQGIRTGNCV PFNGTVKTCE IFGWCPVEVD DKIPRRNLVE 180
  181 EVNGTYMKKC LYHKIQHPLC PVFNLGYVVR ESGQDFRSLA EKGGVVGITI DWKCDLDWHV 240
  241 RHCKPIYQFH GLYGEKNLSP GFNFRFARHF VQNGTNRRHL FKVFGIHFDI LVDGKAGKFD 300
  301 IIPTMTTIGS GIGIFGVATV LCDLLLLHIL PKRHYYKQKK FKYAEDMGPG EGEHDPVATS 360
  361 STLGLQENMR TS

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	51	0.91
Non-Cytoplasmic	52	307	0.97
Transmembrane Helix	308	330	0.77
Cytoplasmic	331	372	0.83