YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111335, gi\|48...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAAALLAR AGGSLGRALR ARDWRRLHTV YQSVELPETH QMLRQTCRDF AEKELVPIAA  60
   61 QLDKEHLFPT SQVKKMGELG LLAMDVPEEL SGAGLDYLAY SIALEEISRG CASTGVIMSV 120
  121 NNSLYLGPIL KFGSSQQKQQ WITPFTNGDK IGCFALSEPG NGSDAGAAST TAREEGDSWV 180
  181 LNGTKAWITN SWEASATVVF ASTDRSRQNK GISAFLVPMP TPGLTLGKKE DKLGIRASST 240
  241 ANLIFEDCRI PKENLLGEPG MGFKIAMQTL DMGRIGIASQ ALGIAQASLD CAVKYAENRH 300
  301 AFGAPLTKLQ NIQFKLADMA LALESARLLT WRAAMLKDNK KPFTKESAMA KLAASEAATA 360
  361 ISHQAIQILG GMGYVTEMPA ERYYRDARIT EIYEGTSEIQ RLVIAGHLLR SYRS

Type	Start	End	Confidence
Signal Peptide	1	18	0.90
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	414	0.99