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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ECE1_RAT
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLRPPQGL GLQWSSFFLG KKGPGLTVSL PLLASSLQVN FRSPRSGQRC WAARTSVEKR  60
   61 LVVLVTLLAA GLVACLAALG IQYRTRTPPV CLTEACVSVT SSILNSMDPT VDPCQDFFSY 120
  121 ACGGWIKANP VPDGHSRWGT FSNLWEHNQA IIKHLLENST ASASEAEKKA QVYYRACMNE 180
  181 TRIEELRAKP LMELIEKLGG WNITGPWAKD NFQDTLQVVT AHYRTSPFFS VYVSADSKNS 240
  241 NSNVIQVDQS GLGLPSRDYY LNKTENEKVL TGYLNYMVQL GKLLGGGDED SIRPQMQQIL 300
  301 DFETALANIT IPQEKRRDEE LIYHKVTAAE LQTLAPAINW LPFLNAIFYP VEINESEPIV 360
  361 VYDKEYLRQV STLINSTDKC LLNNYMMWNL VRKTSSFLDQ RFQDADEKFM EVMYGTKKTC 420
  421 LPRWKFCVSD TENNLGFALG PMFVKATFAE DSKNIASEII LEIKKAFEES LSTLKWMDED 480
  481 TRRSAKEKAD AIYNMIGYPN FIMDPKELDK VFNDYTAVPD LYFENAMRFF NFSLRVTADQ 540
  541 LRKAPNRDQW SMTPPMVNAY YSPTKNEIVF PAGILQAPFY TRSSPNALNF GGIGVVVGHE 600
  601 LTHAFDDQGR EYDKDGNLRP WWKNSSVEAF KQQTECMVQQ YNNYSVNGEP VNGRHTLGEN 660
  661 IADNGGLKAA YRAYQNWVKK NGAEQILPTL GLTSNQLFFL GFAQVWCSVR TPESSHEGLI 720
  721 TDPHSPSRFR VIGSLSNSKE FSEHFRCPLG SPMNPRHKCE VW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle