YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.77
Transmembrane Helix	38	57	0.71
Non-Cytoplasmic	58	70	0.80
Transmembrane Helix	71	95	0.87
Cytoplasmic	96	106	0.86
Transmembrane Helix	107	127	0.91
Non-Cytoplasmic	128	144	0.86
Transmembrane Helix	145	166	0.93
Cytoplasmic	167	186	0.90
Transmembrane Helix	187	208	0.90
Non-Cytoplasmic	209	234	0.91
Transmembrane Helix	235	258	0.94
Cytoplasmic	259	288	0.98
Transmembrane Helix	289	310	0.86
Non-Cytoplasmic	311	322	0.59
Transmembrane Helix	323	341	0.65
Cytoplasmic	342	356	0.57
Transmembrane Helix	357	374	0.54
Non-Cytoplasmic	375	474	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPSESRVP SSLTQDPSFT ASPALLQGIW NSTQNISVRV QLLSVSPTTP GLQAAAWVPF  60
   61 PTVDVPDHAH YTLGTVILLV GLTGMLGNLT VIYTFCRNRG LRTPANMLII NLAVSDFLMS 120
  121 FTQAPVFFAS SLYKKWLFGE TGCKFYAFCG AVFGIVSMIT LTAIAMDRYL VITRPLATIG 180
  181 MRSKRRTALV LLGVWLYALA WSLPPFFGWS AYVPEGLLTS CSWDYVTFTP LVRAYTMLLF 240
  241 CFVFFLPLLI IIFCYIFIFR AIRETGRACE GCGESPLRRR QWQRLQSEWK MAKVALIVIL 300
  301 LFVLSWAPYS TVALVGFAGY SHILTPYMSS VPAVIAKASA IHNPIIYAIT HPKYRAAIAQ 360
  361 HLPCLGVLLG VSGQRSHPSL SYRSTHRSTL SSQSSDLSWI SGQKRQESLG SESEVGWTDT 420
  421 ETTAAWGAAQ QASGQSFCSH DLEDGEVKAP SSPQEQKSKT PKTKRHLPSL DRRM