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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|17865331, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVPACVLVF CVAVVAGVTS EPPGPEQRVG RRAAEVPGPE PSQQEQVAFG SGDTVELSCH  60
   61 PPGGAPTGPT LWAKDGVGLV ASHRILVGPQ RLQVLNATHE DAGVYSCQQR LTRRVLCHFS 120
  121 VRVTDAPSSG DDEDGEDVAE DTGAPYWTRP ERMDKKLLAV PAANTVRFRC PAAGNPTPSI 180
  181 PWLKNGKEFR GEHRIGGIKL RHQQWSLVME SVVPSDRGNY TCVVENKFGS IRQTYTLDVL 240
  241 ERSPHRPILQ AGLPANQTAV LGSDVEFHCK VYSDAQPHIQ WLKHVEVNGS KVGPDGTPYV 300
  301 TVLKTAGANT TDRELEVLSL HNVTFEDAGE YTCLAGNSIG FSHHSAWLVV LPAEEELMEV 360
  361 DEAGSVYAGV LSYGVGFFLF ILVVAAVTLC RLRSPPKKGL GSPTVHKVSR FPLKRQVSLE 420
  421 SNSSMNSNTP LVRIARLSSG EGPVLANVSE LELPADPKWE LSRTRLTLGK PLGEGCFGQV 480
  481 VMAEAIGIDK DRTAKPVTVA VKMLKDDATD KDLSDLVSEM EMMKMIGKHK NIINLLGACT 540
  541 QGGPLYVLVE YAAKGNLREF LRARRPPGMD YSFDACRLPE EQLTCKDLVS CAYQVARGME 600
  601 YLASQKCIHR DLAARNVLVT EDNVMKIADF GLARDVHNLD YYKKTTNGRL PVKWMAPEAL 660
  661 FDRVYTHQSD VWSFGVLLWE IFTLGGSPYP GIPVEELFKL LKEGHRMDKP ANCTHDLYMI 720
  721 MRECWHAVPS QRPTFKQLVE DLDRILTVTS TDEYLDLSVP FEQYSPGGQD TPSSSSSGDD 780
  781 SVFTHDLLPP GPPSNGGPRT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle