YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCNK3_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQNVRTLA LIVCTFTYLL VGAAVFDALE SEPEMIERQR LELRQLELRA RYNLSEGGYE  60
   61 ELERVVLRLK PHKAGVQWRF AGSFYFAITV ITTIGYGHAA PSTDGGKVFC MFYALLGIPL 120
  121 TLVMFQSLGE RINTFVRYLL HRAKRGLGMR HAEVSMANMV LIGFVSCIST LCIGAAAFSY 180
  181 YERWTFFQAY YYCFITLTTI GFGDYVALQK DQALQTQPQY VAFSFVYILT GLTVIGAFLN 240
  241 LVVLRFMTMN AEDEKRDAEH RALLTHNGQA GGLGGLSCLS GSLGDGVRPR DPVTCAAAAG 300
  301 GMGVGVGVGG SGFRNVYAEM LHFQSMCSCL WYKSREKLQY SIPMIIPRDL STSDTCVEHS 360
  361 HSSPGGGGRY SDTPSHPCLC SGTQRSAISS VSTGLHSLAT FRGLMKRRSS V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.64
Transmembrane Helix	8	29	0.72
Non-Cytoplasmic	30	77	0.60
Transmembrane Helix	78	100	0.86
Cytoplasmic	101	107	0.53
Transmembrane Helix	108	129	0.88
Non-Cytoplasmic	130	155	0.58
Transmembrane Helix	156	180	0.88
Cytoplasmic	181	187	0.51
Transmembrane Helix	188	208	0.77
Non-Cytoplasmic	209	222	0.70
Transmembrane Helix	223	244	0.91
Cytoplasmic	245	262	0.70
Transmembrane Helix	263	284	0.69
Non-Cytoplasmic	285	293	0.72
Transmembrane Helix	294	316	0.83
Cytoplasmic	317	411	0.84