YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S13A1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.57
Transmembrane Helix	8	30	0.89
Cytoplasmic	31	37	0.54
Transmembrane Helix	38	64	0.80
Non-Cytoplasmic	65	79	0.50
Transmembrane Helix	80	99	0.81
Cytoplasmic	100	107	0.45
Transmembrane Helix	108	134	0.67
Non-Cytoplasmic	135	135	0.23
Transmembrane Helix	136	151	0.57
Cytoplasmic	152	236	0.94
Transmembrane Helix	237	259	0.87
Non-Cytoplasmic	260	285	0.89
Transmembrane Helix	286	308	0.86
Cytoplasmic	309	344	0.94
Transmembrane Helix	345	363	0.91
Non-Cytoplasmic	364	380	0.87
Transmembrane Helix	381	399	0.94
Cytoplasmic	400	429	0.87
Transmembrane Helix	430	454	0.74
Non-Cytoplasmic	455	464	0.64
Transmembrane Helix	465	485	0.84
Cytoplasmic	486	491	0.50
Transmembrane Helix	492	510	0.61
Non-Cytoplasmic	511	512	0.44
Transmembrane Helix	513	540	0.69
Cytoplasmic	541	552	0.58
Transmembrane Helix	553	573	0.93
Non-Cytoplasmic	574	595	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLNYAFVY RRFLLVVFTV LVLLPLPLII RSKEAECAYI LFVIATFWIT EALPLSITAL  60
   61 LPGLMFPMFG IMSSTHVASA YFKDFHLLLI GVICLATSIE KWNLHKRIAL RMVMMVGVNP 120
  121 AWLTLGFMSS TAFLSMWLSN TSTAAMVMPI VEAVAQQITS AEAEAEATQM TYFNESAAQG 180
  181 LEVDETIIGQ ETNERKEKTK PALGSSNDKG KVSSKMETEK NTVTGAKYRS KKDHMMCKLM 240
  241 CLCIAYSSTI GGLTTITGTS TNLIFSEHFN TRYPDCRCLN FGSWFLFSFP VAVILLLLSW 300
  301 IWLQWLFLGF NFKEMFKCGK TKTLKEKACA EVIKQEYEKL GPMRYQEIVT LVIFIVMALL 360
  361 WFSRDPGFVT GWSVLFSEYP GYVTDSTVAL VAGILFFLIP AKKLTKMTST GDIIAFDYSP 420
  421 LITWKEFQSF MPWDIAILVG GGFALADGCQ VSGLSSWIGS KLSPLGSLPV WLIILISSLI 480
  481 VTSLTEVASN PATITILFPI LSPLAEAIHV NPLHILLPST LCTSFAFLLP VANPPNAIVF 540
  541 SYGHLKVIDM VKAGLGVNIL GVAVVMLGMF TWIEPMFNLH EYPSWAPDIV NQTMP