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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CLCN1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSQSQQHG GEQSWWGTAP QYQYMPFEHC TSYGLPSENG GLQHRPRKDL GPRHNAHPTQ  60
   61 IYGHHKEQYS YQAQDRGIPK KTDSSSTVDS LDEDHYSKCQ DCVHRLGRVL RRKLGEDWIF 120
  121 LVLLGLLMAL VSWCMDYVSA KSLQAYKWTY AQMQPSLPLQ YLAWVTFPLI LILFSALFCQ 180
  181 LISPQAVGSG IPEMKTILRG VVLKEYLTLK AFVAKVVALT AGLGSGIPVG KEGPFVHIAS 240
  241 ICAAVLSKFM SMFSGVYEQP YYYTDILTVG CAVGVGCCFG TPLGGVLFSI EVTSTYFAVR 300
  301 NYWRGFFAAT FSAFVFRVLA VWNKDAVTIT ALFRTNFRMD FPFDLKELPA FAVIGICCGF 360
  361 LGAVFVYLHR QVMLGVRKHK ALSQFLAKHR LLYPGIVTFV IASLTFPPGM GQFMAGELMP 420
  421 REAISTLFDN NTWVKHIGDP KSLGQSAVWI HPQVNVVIII LLFFVMKFWM SIVATTMPIP 480
  481 CGGFMPVFVL GAAFGRLVGE IMAMLFPEGI LFDDIIYKIL PGGYAVIGAA ALTGAVSHTV 540
  541 STAVICFELT GQIAHILPMM VAVILANMVA QSLQPSLYDS IIQVKKLPYL PDLGWNQLSK 600
  601 FTIFVEDIMV RDVKFVSASC TYGELRNLLQ TTTVKTLPLV DSKDSMILLG SVERSELQSL 660
  661 LQRHLCAERR LKAAQDMARK LSELPYNGQA QLAGEWHPGG RPESFAFVDE DEDEDVSRKT 720
  721 ELPQTPTPPP PPPPPLPPQF PIAPSYPEEP NGPLPSHKQP PEASDSADQR SSIFQRLLHC 780
  781 LLGKAHSTKK KITQDSTDLV DNMSPEEIEA WEREQLSQPV CFDFCCIDQS PFQLVEQTTL 840
  841 HKTHTLFSLL GLHLAYVTSM GKLRGVLALE ELQKAIKGHT KSGVQLRPPL ASFRNTTSIR 900
  901 KTPGGPPPPA ESWNVPEGED GAPEREVMVP TMPETPVPPP SPEVPSCLAP ARVEGELEEL 960
  961 EMVGNLGPEE DLADILHGPS LRSTDEEDED ELIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle