YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PACR_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	154	0.99
Transmembrane Helix	155	175	0.90
Cytoplasmic	176	185	0.80
Transmembrane Helix	186	209	0.81
Non-Cytoplasmic	210	235	0.87
Transmembrane Helix	236	255	0.84
Cytoplasmic	256	264	0.78
Transmembrane Helix	265	286	0.95
Non-Cytoplasmic	287	306	0.90
Transmembrane Helix	307	331	0.88
Cytoplasmic	332	405	0.98
Transmembrane Helix	406	424	0.92
Non-Cytoplasmic	425	440	0.81
Transmembrane Helix	441	462	0.82
Cytoplasmic	463	523	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVLQLSLT ALLLPVAIAM HSDCIFKKEQ AMCLERIQRA NDLMGLNESS PGCPGMWDNI  60
   61 TCWKPAQVGE MVLVSCPEVF RIFNPDQVWM TETIGDSGFA DSNSLEITDM GVVGRNCTED 120
  121 GWSEPFPHYF DACGFDDYEP ESGDQDYYYL SVKALYTVGY STSLATLTTA MVILCRFRKL 180
  181 HCTRNFIHMN LFVSFMLRAI SVFIKDWILY AEQDSSHCFV STVECKAVMV FFHYCVVSNY 240
  241 FWLFIEGLYL FTLLVETFFP ERRYFYWYTI IGWGTPTVCV TVWAVLRLYF DDAGCWDMND 300
  301 STALWWVIKG PVVGSIMVNF VLFIGIIIIL VQKLQSPDMG GNESSIYLTN LRLRVPKKTR 360
  361 EDPLPVPSDQ HSPPFLSCVQ KCYCKPQRAQ QHSCKMSELS TITLRLARST LLLIPLFGIH 420
  421 YTVFAFSPEN VSKRERLVFE LGLGSFQGFV VAVLYCFLNG EVQAEIKRKW RSWKVNRYFT 480
  481 MDFKHRHPSL ASSGVNGGTQ LSILSKSSSQ LRMSSLPADN LAT