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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CAC1S_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPTTAKLKID EFESNVNEVK DPYPSADFPG DDEEDEPEIP ASPRPRPLAE LQLKEKAVPI  60
   61 PEASSFFIFS PTNKIRVLCH RIVNATWFTN FILLFILLSS AALAAEDPIR ADSMRNQILE 120
  121 YFDYVFTAVF TVEIVLKMTT YGAFLHKGSF CRNYFNILDL LVVAVSLISM GLESSAISVV 180
  181 KILRVLRVLR PLRAINRAKG LKHVVQCVFV AIRTIGNIVL VTTLLQFMFA CIGVQLFKGK 240
  241 FYSCNDLSKM TEEECRGYYY IYKDGDPTQI ELRPRQWIHN DFHFDNVLSA MMSLFTVSTF 300
  301 EGWPQLLYKA IDSNEEDTGP VYNNRVEMAI FFIIYIILIA FFMMNIFVGF VIVTFQEQGE 360
  361 TEYKNCELDK NQRQCVQYAL KARPLRCYIP KNPYQYQVWY VVTSSYFEYL MFALIMLNTI 420
  421 CLGMQHYNQS EQMNHISDIL NVAFTIIFTL EMILKLIAFK PRGYFGDPWN VFDFLIVIGS 480
  481 IIDVILSEID TLLASSGGLY CLGGGCGNVD PDESARISSA FFRLFRVMRL IKLLSRAEGV 540
  541 RTLLWTFIKS FQALPYVALL IVMLFFIYAV IGMQMFGKIA MVDGTQINRN NNFQTFPQAV 600
  601 LLLFRCATGE AWQEILLACS YGKRCDPESD YAPGEEYACG TNFAYYYFIS FYMLCAFLII 660
  661 NLFVAVIMDN FDYLTRDWSI LGPHHLDEFK AIWAEYDPEA KGRIKHLDVV TLLRRIQPPL 720
  721 GFGKFCPHRV ACKRLVGMNM PLNSDGTVTF NATLFALVRT ALKIKTEGNF EQANEELRAI 780
  781 IKKIWKRTSM KLLDQVIPPI GDDEVTVGKF YATFLIQEHF RKFMKRQEEY YGYRPKKDTV 840
  841 QIQAGLRTIE EEAAPEIHRA ISGDLTAEEE LERAMVEAAM EEGIFRRTGG LFGQVDNFLE 900
  901 RTNSLPPVMA NQRPLQFAEM EMEELESPVF LEDFPQNPGT HPLARANTNN ANANVAYGNS 960
  961 SHRNSPVFSS IRYERELLEE AGRPVTREGP FSQPCSVSGV NSRSHVDKLE RQMSQRRMPK1020
 1021 GQVPPSPCQL SQEKHPVHEE GKGPRSWSTE TSDSESFEER VPRNSAHKCT APATTMLIQE1080
 1081 ALVRGGLDSL AADANFVMAT GQALADACQM EPEEVEVAAT ELLKRESPKG GPCPGSLEPK1140
 1141 VLPWAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle