YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1G_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.71
Transmembrane Helix	123	143	0.70
Non-Cytoplasmic	144	210	0.57
Transmembrane Helix	211	234	0.86
Cytoplasmic	235	339	0.89
Transmembrane Helix	340	362	0.82
Non-Cytoplasmic	363	371	0.80
Transmembrane Helix	372	395	0.93
Cytoplasmic	396	744	0.86
Transmembrane Helix	745	765	0.64
Non-Cytoplasmic	766	777	0.59
Transmembrane Helix	778	798	0.75
Cytoplasmic	799	807	0.53
Transmembrane Helix	808	830	0.65
Non-Cytoplasmic	831	865	0.52
Transmembrane Helix	866	889	0.87
Cytoplasmic	890	906	0.52
Transmembrane Helix	907	922	0.41
Non-Cytoplasmic	923	939	0.69
Transmembrane Helix	940	962	0.87
Cytoplasmic	963	1254	0.74
Transmembrane Helix	1255	1274	0.77
Non-Cytoplasmic	1275	1293	0.52
Transmembrane Helix	1294	1315	0.83
Cytoplasmic	1316	1324	0.50
Transmembrane Helix	1325	1346	0.79
Non-Cytoplasmic	1347	1390	0.47
Transmembrane Helix	1391	1413	0.88
Cytoplasmic	1414	1447	0.48
Transmembrane Helix	1448	1463	0.41
Non-Cytoplasmic	1464	1492	0.85
Transmembrane Helix	1493	1515	0.93
Cytoplasmic	1516	1575	0.91
Transmembrane Helix	1576	1598	0.80
Non-Cytoplasmic	1599	1612	0.77
Transmembrane Helix	1613	1633	0.86
Cytoplasmic	1634	1687	0.63
Transmembrane Helix	1688	1705	0.47
Non-Cytoplasmic	1706	1710	0.43
Transmembrane Helix	1711	1734	0.80
Cytoplasmic	1735	1750	0.55
Transmembrane Helix	1751	1766	0.49
Non-Cytoplasmic	1767	1796	0.65
Transmembrane Helix	1797	1819	0.75
Cytoplasmic	1820	2254	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEDGAGA EESGQPRSFT QLNDLSGAGG RQGPGSTEKD PGSADSEAEG LPYPALAPVV  60
   61 FFYLSQDSRP RSWCLRTVCN PWFERVSMLV ILLNCVTLGM FRPCEDIACD SQRCRILQAF 120
  121 DDFIFAFFAV EMVVKMVALG IFGKKCYLGD TWNRLDFFIV IAGMLEYSLD LQNVSFSAVR 180
  181 TVRVLRPLRA INRVPSMRIL VTLLLDTLPM LGNVLLLCFF VFFIFGIVGV QLWAGLLRNR 240
  241 CFLPENFSLP LSVDLEPYYQ TENEDESPFI CSQPRENGMR SCRSVPTLRG EGGGGPPCSL 300
  301 DYETYNSSSN TTCVNWNQYY TNCSAGEHNP FKGAINFDNI GYAWIAIFQV ITLEGWVDIM 360
  361 YFVMDAHSFY NFIYFILLII VGSFFMINLC LVVIATQFSE TKQRESQLMR EQRVRFLSNA 420
  421 STLASFSEPG SCYEELLKYL VYILRKAARR LAQVSRAIGV RAGLLSSPVA RSGQEPQPSG 480
  481 SCTRSHRRLS VHHLVHHHHH HHHHYHLGNG TLRVPRASPE IQDRDANGSR RLMLPPPSTP 540
  541 TPSGGPPRGA ESVHSFYHAD CHLEPVRCQA PPPRCPSEAS GRTVGSGKVY PTVHTSPPPE 600
  601 ILKDKALVEV APSPGPPTLT SFNIPPGPFS SMHKLLETQS TGACHSSCKI SSPCSKADSG 660
  661 ACGPDSCPYC ARTGAGEPES ADHVMPDSDS EAVYEFTQDA QHSDLRDPHS RRRQRSLGPD 720
  721 AEPSSVLAFW RLICDTFRKI VDSKYFGRGI MIAILVNTLS MGIEYHEQPE ELTNALEISN 780
  781 IVFTSLFALE MLLKLLVYGP FGYIKNPYNI FDGVIVVISV WEIVGQQGGG LSVLRTFRLM 840
  841 RVLKLVRFLP ALQRQLVVLM KTMDNVATFC MLLMLFIFIF SILGMHLFGC KFASERDGDT 900
  901 LPDRKNFDSL LWAIVTVFQI LTQEDWNKVL YNGMASTSSW AALYFIALMT FGNYVLFNLL 960
  961 VAILVEGFQA EGDATKSESE PDFFSPSVDG DGDRKKRLAL VALGEHAELR KSLLPPLIIH1020
 1021 TAATPMSHPK SSSTGVGEAL GSGSRRTSSS GSAEPGAAHH EMKCPPSARS SPHSPWSAAS1080
 1081 SWTSRRSSRN SLGRAPSLKR RSPSGERRSL LSGEGQESQD EEESSEEDRA SPAGSDHRHR1140
 1141 GSLEREAKSS FDLPDTLQVP GLHRTASGRS SASEHQDCNG KSASGRLART LRTDDPQLDG1200
 1201 DDDNDEGNLS KGERIQAWVR SRLPACCRER DSWSAYIFPP QSRFRLLCHR IITHKMFDHV1260
 1261 VLVIIFLNCI TIAMERPKID PHSAERIFLT LSNYIFTAVF LAEMTVKVVA LGWCFGEQAY1320
 1321 LRSSWNVLDG LLVLISVIDI LVSMVSDSGT KILGMLRVLR LLRTLRPLRV ISRAQGLKLV1380
 1381 VETLMSSLKP IGNIVVICCA FFIIFGILGV QLFKGKFFVC QGEDTRNITN KSDCAEASYR1440
 1441 WVRHKYNFDN LGQALMSLFV LASKDGWVDI MYDGLDAVGV DQQPIMNHNP WMLLYFISFL1500
 1501 LIVAFFVLNM FVGVVVENFH KCRQHQEEEE ARRREEKRLR RLEKKRRSKE KQMAEAQCKP1560
 1561 YYSDYSRFRL LVHHLCTSHY LDLFITGVIG LNVVTMAMEH YQQPQILDEA LKICNYIFTV1620
 1621 IFVFESVFKL VAFGFRRFFQ DRWNQLDLAI VLLSIMGITL EEIEVNLSLP INPTIIRIMR1680
 1681 VLRIARVLKL LKMAVGMRAL LHTVMQALPQ VGNLGLLFML LFFIFAALGV ELFGDLECDE1740
 1741 THPCEGLGRH ATFRNFGMAF LTLFRVSTGD NWNGIMKDTL RDCDQESTCY NTVISPIYFV1800
 1801 SFVLTAQFVL VNVVIAVLMK HLEESNKEAK EEAELEAELE LEMKTLSPQP HSPLGSPFLW1860
 1861 PGVEGVNSTD SPKPGAPHTT AHIGAASGFS LEHPTMVPHP EEVPVPLGPD LLTVRKSGVS1920
 1921 RTHSLPNDSY MCRNGSTAER SLGHRGWGLP KAQSGSILSV HSQPADTSCI LQLPKDVHYL1980
 1981 LQPHGAPTWG AIPKLPPPGR SPLAQRPLRR QAAIRTDSLD VQGLGSREDL LSEVSGPSCP2040
 2041 LTRSSSFWGG SSIQVQQRSG IQSKVSKHIR LPAPCPGLEP SWAKDPPETR SSLELDTELS2100
 2101 WISGDLLPSS QEEPLFPRDL KKCYSVETQS CRRRPGFWLD EQRRHSIAVS CLDSGSQPRL2160
 2161 CPSPSSLGGQ PLGGPGSRPK KKLSPPSISI DPPESQGSRP PCSPGVCLRR RAPASDSKDP2220
 2221 SVSSPLDSTA ASPSPKKDTL SLSGLSSDPT DMDP