YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANKH_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKFPALTHY WPLIRFLVPL GITNIAIDFG EQALNRGIAA VKEDAVEMLA SYGLAYSLMK  60
   61 FFAGPMSDFK NVGLVFVNSK RDRAKAVLCM VVAGAIAAVF HTLIAYSDLG YYIINKLHHV 120
  121 DESVGSKTRR AFLYLAAFPF MDAMAWTHAG ILLKHKYSFL VGCASISDVI AQVVFVAILL 180
  181 HSHLECREPL LIPILSLYMG ALVRCTTLCL GYYRNIHDII PDRSGPELGG DATIRKMLSF 240
  241 WWPLALILAT QRISRPIVNL FVSRDLGGSS AATEAVAILT ATYPVGHMPY GWLTEIRAVY 300
  301 PAFDKNNPSN KLANTNNTVT SAHIKKFTFV CMALSLTLCF VMFWTPNVSE KILIDIIGVD 360
  361 FAFAELCVIP LRIFSFFPVP VTVRAHLTGW LMTLKKTFVL APSSVLRIIV LITSLVVLPY 420
  421 LGVHGATLGV GSLLAGFVGE STMVALAACY VYRKQKKKME NESATEGEDS AMTDMPPAEE 480
  481 VTDIVEMREE NE

Type	Start	End	Confidence
Cytoplasmic	1	85	0.60
Transmembrane Helix	86	105	0.95
Non-Cytoplasmic	106	130	0.90
Transmembrane Helix	131	152	0.87
Cytoplasmic	153	158	0.80
Transmembrane Helix	159	181	0.92
Non-Cytoplasmic	182	189	0.80
Transmembrane Helix	190	213	0.84
Cytoplasmic	214	326	0.72
Transmembrane Helix	327	346	0.93
Non-Cytoplasmic	347	360	0.74
Transmembrane Helix	361	383	0.77
Cytoplasmic	384	397	0.83
Transmembrane Helix	398	423	0.80
Non-Cytoplasmic	424	429	0.73
Transmembrane Helix	430	452	0.91
Cytoplasmic	453	492	0.99