YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1E_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.69
Transmembrane Helix	81	102	0.93
Non-Cytoplasmic	103	112	0.71
Transmembrane Helix	113	134	0.87
Cytoplasmic	135	145	0.75
Transmembrane Helix	146	166	0.52
Non-Cytoplasmic	167	171	0.58
Transmembrane Helix	172	194	0.88
Cytoplasmic	195	244	0.73
Transmembrane Helix	245	264	0.70
Non-Cytoplasmic	265	279	0.88
Transmembrane Helix	280	301	0.93
Cytoplasmic	302	427	0.98
Transmembrane Helix	428	449	0.95
Non-Cytoplasmic	450	456	0.84
Transmembrane Helix	457	476	0.90
Cytoplasmic	477	484	0.79
Transmembrane Helix	485	511	0.73
Non-Cytoplasmic	512	514	0.52
Transmembrane Helix	515	530	0.55
Cytoplasmic	531	553	0.58
Transmembrane Helix	554	576	0.90
Non-Cytoplasmic	577	628	0.66
Transmembrane Helix	629	651	0.84
Cytoplasmic	652	1103	0.80
Transmembrane Helix	1104	1124	0.76
Non-Cytoplasmic	1125	1173	0.60
Transmembrane Helix	1174	1197	0.85
Cytoplasmic	1198	1353	0.58
Transmembrane Helix	1354	1376	0.95
Non-Cytoplasmic	1377	1430	0.75
Transmembrane Helix	1431	1452	0.83
Cytoplasmic	1453	1463	0.67
Transmembrane Helix	1464	1487	0.87
Non-Cytoplasmic	1488	1557	0.53
Transmembrane Helix	1558	1581	0.85
Cytoplasmic	1582	1651	0.80
Transmembrane Helix	1652	1675	0.90
Non-Cytoplasmic	1676	2222	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYNPIPVR QNCFTVNRSL FIFGEDNIVR KYAKKLIDWP PFEYMILATI IANCIVLALE  60
   61 QHLPEDDKTP MSRRLEKTEP YFIGIFCFEA GIKIVALGFI FHKGSYLRNG WNVMDFIVVL 120
  121 SGILATAGTH FNTHVDLRTL RAVRVLRPLK LVSGIPSLQI VLKSIMKAMV PLLQIGLLLF 180
  181 FAILMFAIIG LEFYSGKLHR ACFMNNSGIL EGFDPPHPCG VQGCPAGYEC KDWIGPNDGI 240
  241 TQFDNILFAV LTVFQCITME GWTTVLYNTN DALGATWNWL YFIPLIIIGS FFVLNLVLGV 300
  301 LSGEFAKERE RVENRRAFMK LRRQQQIERE LNGYRAWIDK AEEVMLAEEN KNSGTSALEV 360
  361 LRRATIKRSR TEAMTRDSSD EHCVDISSVG TPLARASIKS TKVDGASYFR HKERLLRISI 420
  421 RHMVKSQVFY WIVLSVVALN TACVAIVHHN QPQWLTHLLY YAEFLFLGLF LLEMSLKMYG 480
  481 MGPRLYFHSS FNCFDFGVTV GSIFEVVWAI FRPGTSFGIS VLRALRLLRI FKITKYWASL 540
  541 RNLVVSLMSS MKSIISLLFL LFLFIVVFAL LGMQLFGGRF NFNDGTPSAN FDTFPAAIMT 600
  601 VFQILTGEDW NEVMYNGIRS QGGVSSGMWS AIYFIVLTLF GNYTLLNVFL AIAVDNLANA 660
  661 QELTKDEQEE EEAFNQKHAL QKAKEVSPMS APNMPSIERD RRRRHHMSMW EPRSSHLRER 720
  721 RRRHHMSVWE QRTSQLRRHM QMSSQEALNK EEAPPMNPLN PLNPLSPLNP LNAHPSLYRR 780
  781 PRPIEGLALG LGLEKCEEER ISRGGSLKGD IGGLTSVLDN QRSPLSLGKR EPPWLPRSCH 840
  841 GNCDPTQQET GGGETVVTFE DRARHRQSQR RSRHRRVRTE GKESASASRS RSASQERSLD 900
  901 EGVSIDGEKE HEPQSSHRSK EPTIHEEERT QDLRRTNSLM VPRGSGLVGA LDEAETPLVQ 960
  961 PQPELEVGKD AALTEQEAEG SSEQALLADV QLDVGRGISQ SEPDLSCMTT NMDKATTEST1020
 1021 SVTVAIPDVD PLVDSTVVNI SNKTDGEASP LKEAETKEEE EEVEKKKQKK EKRETGKAMV1080
 1081 PHSSMFIFST TNPIRKACHY IVNLRYFEMC ILLVIAASSI ALAAEDPVLT NSERNKVLRY1140
 1141 FDYVFTGVFT FEMVIKMIDQ GLILQDGSYF RDLWNILDFV VVVGALVAFA LANALGTNKG1200
 1201 RDIKTIKSLR VLRVLRPLKT IKRLPKLKAV FDCVVTSLKN VFNILIVYKL FMFIFAVIAV1260
 1261 QLFKGKFFYC TDSSKDTEKE CIGNYVDHEK NKMEVKGREW KRHEFHYDNI IWALLTLFTV1320
 1321 STGEGWPQVL QHSVDVTEED RGPSRSNRME MSIFYVVYFV VFPFFFVNIF VALIIITFQE1380
 1381 QGDKMMEECS LEKNERACID FAISAKPLTR YMPQNRHTFQ YRVWHFVVSP SFEYTIMAMI1440
 1441 ALNTVVLMMK YYSAPWTYEL ALKYLNIAFT MVFSLECVLK VIAFGFLNYF RDTWNIFDFI1500
 1501 TVIGSITEII LTDSKLVNTS GFNMSFLKLF RAARLIKLLR QGYTIRILLW TFVQSFKALP1560
 1561 YVCLLIAMLF FIYAIIGMQV FGNIKLDEES HINRHNNFRS FFGSLMLLFR SATGEAWQEI1620
 1621 MLSCLGEKGC EPDTTAPSGQ NESERCGTDL AYVYFVSFIF FCSFLMLNLF VAVIMDNFEY1680
 1681 LTRDSSILGP HHLDEFVRVW AEYDRAACGR IHYTEMYEML TLMSPPLGLG KRCPSKVAYK1740
 1741 RLVLMNMPVA EDMTVHFTST LMALIRTALD IKIAKGGADR QQLDSELQKE TLAIWPHLSQ1800
 1801 KMLDLLVPMP KASDLTVGKI YAAMMIMDYY KQSKVKKQRQ QLEEQKNAPM FQRMEPSSLP1860
 1861 QEIISNAKAL PYLQQDPVSG LSGRSGYPSM SPLSPQEIFQ LACMDPADDG QFQEQQSLVV1920
 1921 TDPSSMRRSF STIRDKRSNS SWLEEFSMER SSENTYKSRR RSYHSSLRLS AHRLNSDSGH1980
 1981 KSDTHRSGGR ERGRSKERKH LLSPDVSRCN SEERGTQADW ESPERRQSRS PSEGRSQTPN2040
 2041 RQGTGSLSES SIPSISDTST PRRSRRQLPP VPPKPRPLLS YSSLMRHTGG ISPPPDGSEG2100
 2101 GSPLASQALE SNSACLTESS NSLHPQQGQH PSPQHYISEP YLALHEDSHA SDCGEEETLT2160
 2161 FEAAVATSLG RSNTIGSAPP LRHSWQMPNG HYRRRRLGGL GLAMMCGAVS DLLSDTEEDD2220
 2221 KC