YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	I11RA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSRSGLTR VLVAVATALV SSSTPCPQAW GPPGVQYGQP GRPVMLCCPG VNAGTPVSWF  60
   61 RDGDSRLLQG PDSGLGHRLV LAQVDSRDEG TYVCRTLDGV FGGMVTLKLG SPPARPEVSC 120
  121 QAVDYENFSC TWSPGRVSGL PTRYLTSYRK KTLPGAESQR ESPSTGPWPC PQDPLEASRC 180
  181 VVHGAEFWSE YRINVTEVNP LGASTCLLDV RLQRILRPDP PQGLRVESVP GYPRRLHASW 240
  241 TYPASWRRQP HFLLKFRLQY RPAQHPAWST VEPIGLEELI TDAVAGLPHA VRVSARDFLD 300
  301 AGTWSAWSPE AWGTPSTGPL RDEVPDGSRG HEQKLEAAAQ EDSPAPPSPS LQPDPRPLDH 360
  361 RDPLEQVAVL ASLGIFSFLG LAVGALALGL WLRLRRSGKD GPQKPGFLAP MIPGDKLPGI 420
  421 PNLQRTPENF S

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	367	0.99
Transmembrane Helix	368	392	0.89
Cytoplasmic	393	431	0.98