YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190337416, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	220	0.99
Transmembrane Helix	221	243	0.94
Cytoplasmic	244	254	0.89
Transmembrane Helix	255	275	0.92
Non-Cytoplasmic	276	314	0.88
Transmembrane Helix	315	332	0.89
Cytoplasmic	333	344	0.82
Transmembrane Helix	345	365	0.89
Non-Cytoplasmic	366	390	0.88
Transmembrane Helix	391	413	0.91
Cytoplasmic	414	433	0.89
Transmembrane Helix	434	456	0.92
Non-Cytoplasmic	457	493	0.96
Transmembrane Helix	494	514	0.95
Cytoplasmic	515	538	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARALFLIA LGALSARAQY GDRGMSVPEH GFCQPISIPL CTDIAYNETI MPNLLGHTNQ  60
   61 EDAGLEVHQF YPLVKVQCSP DLKFFLCSMY APVCTVLEQA LPPCRSLCER ARQGCEALMN 120
  121 KFGFQWPESL ACESFPVHGG ELCVGQNTTG PSPPVSPTPD ATQAPPEPSQ RGRFQCPPSL 180
  181 RVPPYLNYRF MGEDNCGAPC EPRKLHGMMY FSEDEQKFAR IWIGIWSVLC CASTLFTVLT 240
  241 YLVDMKRFSY PERPIIFLSG CYTMVSIAYI AGFLLEDKVV CNEQFENEFR TVVQGTKKEG 300
  301 CTILFMMLYF FSMSSSIWWV ILALTWFLAA GMKWGHEAIE ANSQYFHLAA WAVPAIKTIT 360
  361 ILAVGQVDGD VLSGVCFVGI NSVDALRGFV LAPLFVYLFI GTSFLLAGFV SLFRIRTIMK 420
  421 HDGTKTEKLE KLMVRIGIFS VLYTVPATIV IACYFYEQAF RAHWEQTWSA HSCKTYAVPC 480
  481 PAHNPQMNPD FTVFMIKYLM TLIVGITSGF WIWSGKTLNS WRKFYTRLAN SKQGETTV