YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148228803, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKVGRPG MSIFSPCRVV AAVSLILIIL GGLGAAIWAL VTYLRTTEDT GLFDVQVSAA  60
   61 DQRLRVFDST QWRWKYVCSS SVNQLIANIT CEEMGFVRAV NFSVTCAPES GGDRDFFCVK 120
  121 ESELTYGKKI KTALYPCKCD KGQILEVICQ DCGRRMLPEE RIVGGVDARQ GSWPWQVSLQ 180
  181 YDGVHQCGGS IISDRWIISA AHCFPERYRH ASRWRVLMGS IYNTPIRKNV VIAEVKTVVY 240
  241 HSSYLPFVDA NIDDNSRDIA VISLTKPLQF TDYIQPVCLP TYGQRLADGQ MGTVTGWGNV 300
  301 EYYGTQANVL QEAHVPIISD AVCNGPDYYD NQVTTTMFCA GYEKGGTDSC QGDSGGPFVA 360
  361 ADVLSKTSRY RLLGVVSWGT GCAMAKKPGV YTRVSRFLPW ISTAMRMYEN SPGVHKMARA 420
  421 ATP

Type	Start	End	Confidence
Cytoplasmic	1	18	0.82
Transmembrane Helix	19	40	0.84
Non-Cytoplasmic	41	423	0.99