YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIPG_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLLLITSVI STFGGAHGLF GKLGPGNPEA NMNISQMITY WGYPCQEYEV VTEDGYILGV  60
   61 YRIPHGKNNS ENIGKRPVVY LQHGLIASAT NWIANLPNNS LAFMLADAGY DVWLGNSRGN 120
  121 TWSRKNVYYS PDSVEFWAFS FDEMAKYDLP ATINFIVQKT GQEKIHYVGH SQGTTIGFIA 180
  181 FSTNPTLAKK IKTFYALAPV ATVKYTQSPL KKISFIPTFL FKLMFGKKMF LPHTYFDDFL 240
  241 GTEVCSREVL DLLCSNTLFI FCGFDKKNLN VSRFDVYLGH NPAGTSVQDF LHWAQLVRSG 300
  301 KFQAFNWGSP SQNMLHYNQK TPPEYDVSAM TVPVAVWNGG NDILADPQDV AMLLPKLSNL 360
  361 LFHKEILAYN HLDFIWAMDA PQEVYNEMIS MMAED

Type	Start	End	Confidence
Signal Peptide	1	18	0.98
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	395	0.99