YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRFR1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	119	0.97
Transmembrane Helix	120	142	0.91
Cytoplasmic	143	152	0.88
Transmembrane Helix	153	173	0.89
Non-Cytoplasmic	174	200	0.85
Transmembrane Helix	201	221	0.86
Cytoplasmic	222	228	0.86
Transmembrane Helix	229	249	0.94
Non-Cytoplasmic	250	270	0.92
Transmembrane Helix	271	293	0.89
Cytoplasmic	294	311	0.93
Transmembrane Helix	312	332	0.92
Non-Cytoplasmic	333	349	0.81
Transmembrane Helix	350	370	0.86
Cytoplasmic	371	415	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRPQLRLV KALLLLGLNP VSTSLQDQRC ENLSLTSNVS GLQCNASVDL IGTCWPRSPA  60
   61 GQLVVRPCPA FFYGVRYNTT NNGYRECLAN GSWAARVNYS ECQEILNEEK KSKVHYHVAV 120
  121 IINYLGHCIS LVALLVAFVL FLRLRSIRCL RNIIHWNLIS AFILRNATWF VVQLTVSPEV 180
  181 HQSNVAWCRL VTAAYNYFHV TNFFWMFGEG CYLHTAIVLT YSTDRLRKWM FVCIGWGVPF 240
  241 PIIVAWAIGK LHYDNEKCWF GKRPGVYTDY IYQGPMILVL LINFIFLFNI VRILMTKLRA 300
  301 STTSETIQYR KAVKATLVLL PLLGITYMLF FVNPGEDEVS RVVFIYFNSF LESFQGFFVS 360
  361 VFYCFLNSEV RSAIRKRWRR WQDKHSIRAR VARAMSIPTS PTRVSFHSIK QSTAV