YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHA6_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNGWGRGDL RSGLCLWICG FLAFFKGSRG CVSEEQLFHT LFAHYNRFIR PVENVSDPVT  60
   61 VHFELAITQL ANVDEVNQIM ETNLWLRHVW KDYRLCWDPT EYDGIETLRV PADNIWKPDI 120
  121 VLYNNAVGDF QVEGKTKALL KYDGVITWTP PAIFKSSCPM DITFFPFDHQ NCSLKFGSWT 180
  181 YDKAEIDLLI IGSKVDMNDF WENSEWEIVD ASGYKHDIKY NCCEEIYTDI TYSFYIRRLP 240
  241 MFYTINLIIP CLFISFLTVL VFYLPSDCGE KVTLCISVLL SLTVFLLVIT ETIPSTSLVI 300
  301 PLVGEYLLFT MIFVTLSIVV TVFVLNIHYR TPATHTMPKW VKTMFLQVFP SILMMRRPLD 360
  361 KTKEMDGVKD PKTHTKRPAK VKFTHRKEPK LLKECRHCHK SSEIAPGKRL SQQPAQWVTE 420
  421 NSEHPPDVED VIDSVQFIAE NMKSHNETKE VEDDWKYMAM VVDRVFLWVF IIVCVFGTVG 480
  481 LFLQPLLGNT GAS

Type	Start	End	Confidence
Signal Peptide	1	30	0.69
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	241	0.96
Transmembrane Helix	242	264	0.94
Cytoplasmic	265	271	0.89
Transmembrane Helix	272	293	0.90
Non-Cytoplasmic	294	305	0.79
Transmembrane Helix	306	329	0.90
Cytoplasmic	330	464	0.99
Transmembrane Helix	465	487	0.92
Non-Cytoplasmic	488	493	0.94