YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	33	0.90
Non-Cytoplasmic	34	68	0.94
Transmembrane Helix	69	89	0.91
Cytoplasmic	90	97	0.79
Transmembrane Helix	98	116	0.96
Non-Cytoplasmic	117	124	0.76
Transmembrane Helix	125	148	0.85
Cytoplasmic	149	159	0.78
Transmembrane Helix	160	182	0.89
Non-Cytoplasmic	183	190	0.85
Transmembrane Helix	191	212	0.93
Cytoplasmic	213	288	0.97
Transmembrane Helix	289	312	0.90
Non-Cytoplasmic	313	325	0.84
Transmembrane Helix	326	344	0.73
Cytoplasmic	345	359	0.68
Transmembrane Helix	360	380	0.90
Non-Cytoplasmic	381	393	0.64
Transmembrane Helix	394	417	0.86
Cytoplasmic	418	428	0.72
Transmembrane Helix	429	452	0.90
Non-Cytoplasmic	453	456	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHGNAPRDS YHLVGISFFI LGLGTLLPWN FFITAIPYFQ GRLAGTNSSA ETPSTNHTSP  60
   61 TDTFNFNNWV TLLSQLPLLL FTLLNSFLYQ CIPESVRILG SLLAILLLFA LTAALVKVDL 120
  121 SPGLFFSITM ASVWFINSFC AVLQGSLFGQ LGTMPSTYST LFLSGQGLAG IFAALAMLTS 180
  181 LASGVDPQTS ALGYFITPCV GILLSIICYL SLPHLKFARY YLTKKPQAPV QELETKAELL 240
  241 GADEKNGIPV SPQQAGPTLD LDPEKELELG LEEPQKPGKP SVFVVFRKIW LTALCLVLVF 300
  301 TVTLSVFPAI TAMVTTSSNS PGKWSQFFNP ICCFLLFNVM DWLGRSLTSY FLWPDEDSQL 360
  361 LPLLVCLRFL FVPLFMLCHV PQRARLPIIF WQDAYFITFM LLFAISNGYF VSLTMCLAPR 420
  421 QVLPHEREVA GALMTFFLAL GLSCGASLSF LFKALL